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L3_105_000M1_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_304_1
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(1..213)
DNA (213bp) protein (71aa)
30S ribosomal protein S10 n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6V7_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rpsJ; 30S ribosomal protein S10
L3_105_000M1_scaffold_304_2
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(701..2149)
DNA (1449bp) protein (483aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DTF8_9FIRM
L3_105_000M1_scaffold_304_3
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(2465..2989)
DNA (525bp) protein (175aa)
pgsA; phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVA6_9FIRM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDA81887.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_105_000M1_scaffold_304_4
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(3061..4380)
DNA (1320bp) protein (440aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DCE6_9FIRM
hypothetical protein
L3_105_000M1_scaffold_304_5
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(4392..5012)
DNA (621bp) protein (207aa)
Regulatory protein RecX n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D230_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
recX; regulatory protein RecX
L3_105_000M1_scaffold_304_6
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


comp(5012..6118)
DNA (1107bp) protein (369aa)
Protein RecA n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DA57_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
recA; RecA protein
L3_105_000M1_scaffold_304_7
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(6185..7051)
DNA (867bp) protein (289aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hemK; protein methyltransferase HemK (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CZL1_9FIRM
L3_105_000M1_scaffold_304_8
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(7073..8020)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81882.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_304_9
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(8091..9533)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
putative two-component histidine kinase (EC:2.7.13.3)
Putative two-component histidine kinase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DCE2_9FIRM
L3_105_000M1_scaffold_304_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9696..10379)
DNA (684bp) protein (228aa)
Putative transcriptional regulatory protein WalR n=2 Tax=Oscillibacter RepID=U2Q567_9FIRM
OmpR family two-component response regulator {ECO:0000313|EMBL:CDC68381.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
OmpR family two-component response regulator
L3_105_000M1_scaffold_304_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(10399..11715)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CZK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81878.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_304_12
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11866..12792)
DNA (927bp) protein (309aa)
Bacterial group 2 Ig-like protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZR0_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDB27204.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_105_000M1_scaffold_304_13
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

12965..13579
DNA (615bp) protein (205aa)
Uridine kinase {ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|RuleBase:RU003825};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D2N4_9FIRM
L3_105_000M1_scaffold_304_14
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

13581..14336
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DD14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82066.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_304_15
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

14427..14600
DNA (174bp) protein (58aa)
Ferredoxin n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVU7_9FIRM
Ferredoxin {ECO:0000313|EMBL:CDA82067.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
ferredoxin
L3_105_000M1_scaffold_304_16
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

14709..15431
DNA (723bp) protein (241aa)
Putative methyltransferase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D077_9FIRM
Putative methyltransferase {ECO:0000313|EMBL:CDA82068.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
putative methyltransferase
L3_105_000M1_scaffold_304_17
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

15436..16263
DNA (828bp) protein (276aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DAA0_9FIRM
putative methyltransferase
L3_105_000M1_scaffold_304_18
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16394..16639)
DNA (246bp) protein (82aa)
AbrB family transcriptional regulator n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9Y2_9FIRM
AbrB family transcriptional regulator {ECO:0000313|EMBL:EOS67496.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
AbrB family transcriptional regulator
L3_105_000M1_scaffold_304_19
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

16839..17417
DNA (579bp) protein (193aa)
Spore maturation protein A n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVV0_9FIRM
Spore maturation protein A {ECO:0000313|EMBL:CDA82072.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
spmA; spore maturation protein A
L3_105_000M1_scaffold_304_20
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17420..17941
DNA (522bp) protein (174aa)
Spore maturation protein B n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8V5_9FIRM
Spore maturation protein B {ECO:0000313|EMBL:EOS67494.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
spmB; spore maturation protein B
L3_105_000M1_scaffold_304_21
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


comp(17981..19723)
DNA (1743bp) protein (581aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DAT1_9FIRM
L3_105_000M1_scaffold_304_22
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(19720..20166)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D2P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82075.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_105_000M1_scaffold_304_23
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(20175..20990)
DNA (816bp) protein (272aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DD21_9FIRM
L3_105_000M1_scaffold_304_24
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

21169..21582
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DVV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82077.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_304_25
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(21627..23003)
DNA (1377bp) protein (459aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D2P6_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CDA82080.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Uncharacterized FAD-dependent dehydrogenases
L3_105_000M1_scaffold_304_26
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

23192..24022
DNA (831bp) protein (277aa)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DAU2_9FIRM
L3_105_000M1_scaffold_304_27
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

24035..24610
DNA (576bp) protein (192aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D087_9FIRM
L3_105_000M1_scaffold_304_28
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

24570..26669
DNA (2100bp) protein (700aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CY09_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCX72788.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_304_29
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

26961..28802
DNA (1842bp) protein (614aa)
UvrABC system protein C n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DAM2_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
uvrC; UvrABC system protein C
L3_105_000M1_scaffold_304_30
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28799..29761
DNA (963bp) protein (321aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Pyruvate kinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GW97_9FIRM
Pyruvate kinase
Displaying items 1-30 of 71 in total

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