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L3_105_000M1_scaffold_313

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_313_1
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(152..685)
DNA (534bp) protein (178aa)
Alpha-ribazole phosphatase {ECO:0000313|EMBL:EFK63576.1}; EC=3.1.3.73 {ECO:0000313|EMBL:EFK63576.1};; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Alpha-ribazole phosphatase n=6 Tax=Bacteroidales RepID=C7XEU9_9PORP
phosphoglycerate mutase
L3_105_000M1_scaffold_313_2
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(688..1437)
DNA (750bp) protein (250aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
Cobalamin synthase n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6JHR1_9PORP
cobalamin 5'-phosphate synthase
L3_105_000M1_scaffold_313_3
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1439..2479)
DNA (1041bp) protein (347aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TK70_9BACE
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
L3_105_000M1_scaffold_313_4
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2510..3061)
DNA (552bp) protein (184aa)
Cobinamide kinase n=4 Tax=Bacteroidales RepID=A6LIW7_PARD8
Bifunctional adenosylcobalamin biosynthesis protein CobU {ECO:0000313|EMBL:EFI06996.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
cobinamide kinase
L3_105_000M1_scaffold_313_5
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3018..3587)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ALT7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN24555.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
pseudouridine synthase
L3_105_000M1_scaffold_313_6
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3598..4557)
DNA (960bp) protein (320aa)
Cobalamin biosynthesis protein CobD n=2 Tax=Bacteroidales RepID=K6ALC5_9PORP
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
cobalamin biosynthesis protein CbiB
L3_105_000M1_scaffold_313_7
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4939..5490
DNA (552bp) protein (184aa)
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Parabacteroides sp. D25 RepID=K5ZCH9_9PORP
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN24557.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
RNA polymerase ECF-type sigma factor
L3_105_000M1_scaffold_313_8
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5552..6532
DNA (981bp) protein (327aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides RepID=C7XEV6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN24558.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
anti-sigma factor
L3_105_000M1_scaffold_313_9
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6828..10118
DNA (3291bp) protein (1097aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides sp. D25 RepID=K6A971_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN24559.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
TonB-linked outer membrane protein, SusC/RagA family
L3_105_000M1_scaffold_313_10
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10129..11901
DNA (1773bp) protein (591aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6ALU2_9PORP
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:KDS74356.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
RagB/SusD family protein
L3_105_000M1_scaffold_313_11
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11905..13629
DNA (1725bp) protein (575aa)
Uncharacterized protein n=4 Tax=Bacteroidales RepID=K6A8R4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN24561.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
putative lipoprotein
L3_105_000M1_scaffold_313_12
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


13770..14270
DNA (501bp) protein (167aa)
30S ribosomal protein S6 n=2 Tax=Parabacteroides RepID=K5ZCI5_9PORP
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
rpsF; 30S ribosomal protein S6
L3_105_000M1_scaffold_313_13
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


14273..14542
DNA (270bp) protein (90aa)
30S ribosomal protein S18 n=13 Tax=Bacteroidales RepID=RS18_PARD8
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_105_000M1_scaffold_313_14
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


14564..15010
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Parabacteroides sp. D25 RepID=K6A975_9PORP
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
rplI; 50S ribosomal protein L9
L3_105_000M1_scaffold_313_15
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15146..16309
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ALU6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN24565.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
N-acetylmuramoyl-L-alanine amidase amiA
L3_105_000M1_scaffold_313_16
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16347..17231
DNA (885bp) protein (295aa)
Uncharacterized protein n=9 Tax=Bacteroidales RepID=A6LIY1_PARD8
hypothetical protein
Mce related family protein {ECO:0000313|EMBL:KDS74350.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_105_000M1_scaffold_313_17
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17580..18995
DNA (1416bp) protein (472aa)
Chromosomal replication initiator protein DnaA n=9 Tax=Bacteroidales RepID=A6L7Y2_PARD8
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
dnaA; chromosomal replication initiation protein
L3_105_000M1_scaffold_313_18
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19253..21793
DNA (2541bp) protein (847aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EEU49413.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EEU49413.1};; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Ribonucleoside-diphosphate reductase n=6 Tax=Bacteroidales RepID=A6L7Y3_PARD8
ribonucleoside reductase
L3_105_000M1_scaffold_313_19
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21817..24504
DNA (2688bp) protein (896aa)
4-alpha-glucanotransferase n=2 Tax=Bacteroidales RepID=D7IWK9_9BACE
4-alpha-glucanotransferase {ECO:0000313|EMBL:EFI07012.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
4-alpha-glucanotransferase
L3_105_000M1_scaffold_313_20
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24544..24915)
DNA (372bp) protein (124aa)
Uncharacterized protein n=8 Tax=Bacteroidales RepID=A6L7Y5_PARD8
hypothetical protein
Polymer-forming cytoskeletal family protein {ECO:0000313|EMBL:KDS74346.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_105_000M1_scaffold_313_21
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25007..25375
DNA (369bp) protein (123aa)
Dihydroneopterin aldolase n=10 Tax=Bacteroidales RepID=A6L7Y6_PARD8
dihydroneopterin aldolase
Dihydroneopterin aldolase {ECO:0000313|EMBL:EKN24571.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_105_000M1_scaffold_313_22
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25453..26889
DNA (1437bp) protein (479aa)
4Fe-4S binding domain protein n=7 Tax=Bacteroidales RepID=C7XEX0_9PORP
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU49417.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
hydrogenase
L3_105_000M1_scaffold_313_23
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26895..28142
DNA (1248bp) protein (416aa)
Peptide-N-glycosidase F domain protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TK48_9BACE
Peptide-N-glycosidase F domain protein {ECO:0000313|EMBL:EEY81521.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
hypothetical protein
L3_105_000M1_scaffold_313_24
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28238..28882
DNA (645bp) protein (215aa)
Membrane protein, MarC family n=2 Tax=Parabacteroides RepID=E1YRS8_9PORP
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
MarC family integral membrane protein
L3_105_000M1_scaffold_313_25
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29260..29709)
DNA (450bp) protein (150aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6A8S5_9PORP
Putative beta-hexosaminidase {ECO:0000313|EMBL:KDS74340.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
beta-hexosaminidase
L3_105_000M1_scaffold_313_26
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29894..33829
DNA (3936bp) protein (1312aa)
Response regulator receiver domain protein n=1 Tax=Parabacteroides sp. D13 RepID=C7XEX4_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EEU49421.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
two-component system sensor histidine kinase/response regulator
L3_105_000M1_scaffold_313_27
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34033..35256
DNA (1224bp) protein (408aa)
Integrase n=4 Tax=Bacteroidales RepID=A6L7Z4_PARD8
integrase
Integrase {ECO:0000313|EMBL:ABR41808.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_105_000M1_scaffold_313_28
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35359..35625)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6L7Z5_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR41809.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_105_000M1_scaffold_313_29
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35752..36291
DNA (540bp) protein (180aa)
Transcription termination factor NusG n=4 Tax=Bacteroidales RepID=D7IWL6_9BACE
transcriptional regulator UpxY-like protein
Transcription termination factor nusG family protein {ECO:0000313|EMBL:KDS74336.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_105_000M1_scaffold_313_30
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36288..37424
DNA (1137bp) protein (379aa)
Glycosyltransferase, group 4 family n=3 Tax=Parabacteroides RepID=C7XEX7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26693.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
UDP-phosphate alpha-N-acetylglucosaminyltransferase
Displaying items 1-30 of 66 in total

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