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L3_105_000M1_scaffold_390

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_390_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(62..355)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AJV4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84854.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_105_000M1_scaffold_390_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(459..2639)
DNA (2181bp) protein (727aa)
ATP-dependent DNA helicase RecQ n=3 Tax=Parabacteroides RepID=A7AJV2_9PORP
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EDN84853.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATP-dependent DNA helicase recQ
L3_105_000M1_scaffold_390_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2665..3894)
DNA (1230bp) protein (410aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=4 Tax=Parabacteroides RepID=K6A7B1_9PORP
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX
L3_105_000M1_scaffold_390_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3992..4657)
DNA (666bp) protein (222aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATP-dependent Clp protease proteolytic subunit n=4 Tax=Parabacteroides RepID=A7AJV0_9PORP
ATP-dependent Clp protease proteolytic subunit
L3_105_000M1_scaffold_390_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4844..6199)
DNA (1356bp) protein (452aa)
Trigger factor n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZJ95_9PORP
Trigger factor {ECO:0000313|EMBL:EKN11561.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
FKBP-type peptidyl-prolyl cis-transisomerase
L3_105_000M1_scaffold_390_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6525..6767
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AJU7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15129.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative RNA-binding protein RbpA
L3_105_000M1_scaffold_390_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6837..7742
DNA (906bp) protein (302aa)
CAAX amino terminal protease family protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AJU6_9PORP
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EDN84847.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
metal-dependent membrane protease
L3_105_000M1_scaffold_390_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7739..8509)
DNA (771bp) protein (257aa)
ABC transporter, ATP-binding protein n=2 Tax=Parabacteroides merdae RepID=A7AJU5_9PORP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN84846.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ABC transporter ATP-binding protein
L3_105_000M1_scaffold_390_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8676..9422
DNA (747bp) protein (249aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AJU4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15132.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter permease
L3_105_000M1_scaffold_390_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9426..10214
DNA (789bp) protein (263aa)
ABC transporter, ATP-binding protein n=3 Tax=Parabacteroides RepID=A7AJU3_9PORP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN84844.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ABC transporter ATP-binding protein
L3_105_000M1_scaffold_390_11
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10293..12380)
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BBU6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC96122.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
hypothetical protein
L3_105_000M1_scaffold_390_12
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12449..15406)
DNA (2958bp) protein (986aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DF57_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78860.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
family 2 glycoside hydrolase
L3_105_000M1_scaffold_390_13
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15514..17301)
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZEA3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09726.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
glycan metabolism protein RagB
L3_105_000M1_scaffold_390_14
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17320..20658)
DNA (3339bp) protein (1113aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides johnsonii RepID=K5ZES0_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN09725.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
TonB-dependent receptor plug
L3_105_000M1_scaffold_390_15
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20838..21854)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DF70_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78863.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
anti-sigma factor
L3_105_000M1_scaffold_390_16
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21909..22484)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor n=3 Tax=Parabacteroides RepID=B7BBV3_9PORP
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
RNA polymerase ECF-type sigma factor
L3_105_000M1_scaffold_390_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22603..25515)
DNA (2913bp) protein (971aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZKI1_9PORP
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:CDD15134.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
zinc protease
L3_105_000M1_scaffold_390_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25656..26942)
DNA (1287bp) protein (429aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=4 Tax=Parabacteroides RepID=A7AJU1_9PORP
L3_105_000M1_scaffold_390_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27202..27393)
DNA (192bp) protein (64aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AJT9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15136.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_105_000M1_scaffold_390_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27390..27848)
DNA (459bp) protein (153aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=4 Tax=Parabacteroides RepID=A7AJT8_9PORP
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:EDN84839.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
L3_105_000M1_scaffold_390_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27861..28910)
DNA (1050bp) protein (350aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=3 Tax=Parabacteroides RepID=A7AJT7_9PORP
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
L3_105_000M1_scaffold_390_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28947..29657)
DNA (711bp) protein (237aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tRNA pseudouridine synthase B n=4 Tax=Parabacteroides RepID=A7AJT6_9PORP
tRNA pseudouridine synthase B
L3_105_000M1_scaffold_390_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29660..30460)
DNA (801bp) protein (267aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Undecaprenyl-diphosphatase n=3 Tax=Parabacteroides RepID=A7AJT5_9PORP
undecaprenol kinase
L3_105_000M1_scaffold_390_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30457..30699)
DNA (243bp) protein (81aa)
Uncharacterized protein n=7 Tax=Parabacteroides RepID=A7AJT4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84835.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_105_000M1_scaffold_390_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30704..31582)
DNA (879bp) protein (293aa)
Cell division protein FtsX n=2 Tax=Parabacteroides RepID=K6AUZ2_9PORP
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cell division protein FtsX
L3_105_000M1_scaffold_390_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32005..35871)
DNA (3867bp) protein (1289aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AUG1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84833.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_105_000M1_scaffold_390_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36739..36888
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZKI9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84830.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_105_000M1_scaffold_390_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37001..38371)
DNA (1371bp) protein (457aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Parabacteroides merdae RepID=A7AJS8_9PORP
(dimethylallyl)adenosine tRNA methylthiotransferase
L3_105_000M1_scaffold_390_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38390..38485)
DNA (96bp) protein (32aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A789_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11543.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_105_000M1_scaffold_390_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38622..39050
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AUZ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11889.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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