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L3_105_000M1_scaffold_396

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_396_1
unknown

Not on your lists

comp(3..80)
DNA (78bp) protein (26aa)

This feature has no annotations

L3_105_000M1_scaffold_396_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(235..639)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC33_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03969.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1039..1614)
DNA (576bp) protein (192aa)
Putative AIP processing-secretion protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T197_9FIRM
Putative AIP processing-secretion protein {ECO:0000313|EMBL:CDC67243.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative accessory gene regulator protein B
L3_105_000M1_scaffold_396_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1737..3044)
DNA (1308bp) protein (436aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8W0_9FIRM
Histidine kinase-DNA gyrase B-and HSP90-like ATPase {ECO:0000313|EMBL:CDC67242.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_396_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3041..3769)
DNA (729bp) protein (243aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH75_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO03966.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4005..4334
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4V7_9FIRM
Putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:CCO03965.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_7
unknown

Not on your lists

4615..4722
DNA (108bp) protein (36aa)

This feature has no annotations

L3_105_000M1_scaffold_396_8
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4791..5441
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K6B0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71353.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
hypothetical protein
L3_105_000M1_scaffold_396_9
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5463..6335
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IFC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS20511.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L3_105_000M1_scaffold_396_10
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6448..7014
DNA (567bp) protein (189aa)
Uncharacterized protein n=6 Tax=Enterococcus faecalis RepID=F3R174_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:ETU01532.1}; TaxID=1391474 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0404.;"
hypothetical protein
L3_105_000M1_scaffold_396_11
unknown

Not on your lists

comp(7147..7302)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_105_000M1_scaffold_396_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7711..8139
DNA (429bp) protein (143aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCN7_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDC65616.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_396_13
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8597..8800
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CCU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74438.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_396_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8802..9149
DNA (348bp) protein (116aa)
mazF; Toxin MazF (EC:3.1.-.-)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490, ECO:0000313|EMBL:CCO03964.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
mRNA interferase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CS71_9FIRM
L3_105_000M1_scaffold_396_15
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9142..9300
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CSE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74436.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_396_16
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9498..11042
DNA (1545bp) protein (515aa)
Resolvase n-terminal:recombinase putative n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFK2_9FIRM
Resolvase n-terminal:recombinase putative {ECO:0000313|EMBL:CDA74435.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_105_000M1_scaffold_396_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11149..12087
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFE5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06316.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_18
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12026..13642
DNA (1617bp) protein (539aa)
Resolvase domain n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CCU1_9FIRM
Resolvase domain {ECO:0000313|EMBL:CDA74433.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_105_000M1_scaffold_396_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13702..14781
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2U9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67773.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_105_000M1_scaffold_396_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14819..15322
DNA (504bp) protein (168aa)
AIG2 family protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CCN0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06270.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_21
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15336..15605
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74430.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_396_22
unknown

Not on your lists

comp(15642..15767)
DNA (126bp) protein (42aa)

This feature has no annotations

L3_105_000M1_scaffold_396_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15831..18581)
DNA (2751bp) protein (917aa)
Glycoside Hydrolase Family 3 protein (EC:3.2.1.-)
Beta-glucosidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T172_9FIRM
Beta-glucosidase {ECO:0000313|EMBL:CDC65970.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_396_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18751..24585
DNA (5835bp) protein (1945aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U588_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65972.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_396_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24647..26383)
DNA (1737bp) protein (579aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T8B6_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDC65974.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_000M1_scaffold_396_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26386..28176)
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65976.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_000M1_scaffold_396_27
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28390..29010)
DNA (621bp) protein (207aa)
Transcriptional regulator TetR family n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GLB8_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCY18225.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
regulatory protein TetR
L3_105_000M1_scaffold_396_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29172..30320
DNA (1149bp) protein (383aa)
Citrate transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5A2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05437.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_396_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30705..32240
DNA (1536bp) protein (512aa)
SSS sodium solute transporter superfamily n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5A7_9FIRM
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:CDC65987.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transporter, solute:sodium symporter (SSS) family
L3_105_000M1_scaffold_396_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32851..33258)
DNA (408bp) protein (136aa)
Nudix family hydrolase (EC:3.6.1.-)
Hydrolase NUDIX family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T192_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDC65990.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 65 in total

View Taxonomy