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L3_105_000M1_scaffold_398

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_398_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(141..2477)
DNA (2337bp) protein (779aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CF96_9FIRM
Putative response regulator {ECO:0000313|EMBL:CCO04558.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
putative response regulator
L3_105_000M1_scaffold_398_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2561..5173)
DNA (2613bp) protein (871aa)
Cyclic diguanylate phosphodiesterase (EAL) domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV8_9FIRM
Uncharacterized signaling protein {ECO:0000313|EMBL:CCO04557.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized signaling protein
L3_105_000M1_scaffold_398_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5407..7692
DNA (2286bp) protein (762aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CCO04556.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CCO04556.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
ATP-dependent DNA helicase RecQ n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN2_9FIRM
L3_105_000M1_scaffold_398_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7770..9443)
DNA (1674bp) protein (558aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H0_9FIRM
Uncharacterized signaling protein {ECO:0000313|EMBL:CCO04555.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized signaling protein
L3_105_000M1_scaffold_398_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9597..10532)
DNA (936bp) protein (312aa)
Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT1_9FIRM
Phosphoribulokinase/uridine kinase family protein {ECO:0000313|EMBL:CDC66746.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_105_000M1_scaffold_398_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10625..12211)
DNA (1587bp) protein (529aa)
Putative ribonuclease n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F5_9FIRM
Putative ribonuclease {ECO:0000313|EMBL:CCO04553.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
putative ribonuclease
L3_105_000M1_scaffold_398_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12421..12687
DNA (267bp) protein (89aa)
Sporulation transcriptional regulator SpoIIID n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW2_9FIRM
spore_III_D; sporulation transcriptional regulator SpoIIID
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:CCO04552.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12722..14191)
DNA (1470bp) protein (490aa)
Cation transport protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN7_9FIRM
Cation transport protein {ECO:0000313|EMBL:CDC66749.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
trkH2; Trk system potassium uptake protein TrkH
L3_105_000M1_scaffold_398_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14202..15587)
DNA (1386bp) protein (462aa)
Potassium transporter peripheral membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H5_9FIRM
trkA2; Trk system potassium uptake protein trkA
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:CDC66750.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_398_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15884..18142)
DNA (2259bp) protein (753aa)
ABC-type transport system involved in lipoprotein release permease component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT7_9FIRM
ABC-type transport system involved in lipoprotein release permease component {ECO:0000313|EMBL:CDC66751.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC transporter permease
L3_105_000M1_scaffold_398_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18154..18858)
DNA (705bp) protein (235aa)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F9_9FIRM
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCO04548.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19030..19407)
DNA (378bp) protein (126aa)
Iron dependent repressor N-terminal DNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW6_9FIRM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CCO04547.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19442..19600)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04546.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19652..22141)
DNA (2490bp) protein (830aa)
Ferrous iron transporter FeoB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I0_9FIRM
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CDC66755.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
feoB; Ferrous iron transport protein B
L3_105_000M1_scaffold_398_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22245..22466)
DNA (222bp) protein (74aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFU2_9FIRM
feoA3; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66756.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_398_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22536..22748)
DNA (213bp) protein (71aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G2_9FIRM
feoA2; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66757.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_398_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23045..23452)
DNA (408bp) protein (136aa)
Flavodoxin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX0_9FIRM
fld; Flavodoxin
Flavodoxin {ECO:0000313|EMBL:CCO04542.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23465..24037)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04541.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24081..24380)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I5_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04540.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24752..25360)
DNA (609bp) protein (203aa)
thrH; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (EC:3.1.3.3)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:CCO04539.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCO04539.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFV0_9FIRM
L3_105_000M1_scaffold_398_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25596..26315
DNA (720bp) protein (240aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G6_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC66762.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_105_000M1_scaffold_398_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26312..30838
DNA (4527bp) protein (1509aa)
Listeria/Bacterioides repeat n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04537.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_398_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31004..31579
DNA (576bp) protein (192aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Phosphate propanoyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAQ0_9FIRM
propanediol utilization protein
L3_105_000M1_scaffold_398_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31837..32853
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3J0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04535.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32916..34334)
DNA (1419bp) protein (473aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFV5_9FIRM
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:CCO04534.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34782..35957
DNA (1176bp) protein (392aa)
4-O-beta-D-mannosyl-D-glucose phosphorylase {ECO:0000256|HAMAP-Rule:MF_00928}; Short=MGP {ECO:0000256|HAMAP-Rule:MF_00928};; Short=Mannosylglucose phosphorylase {ECO:0000256|HAMAP-Rule:MF_00928};; EC=2.4.1.281 {ECO:0000256|HAMAP-Rule:MF_00928};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
4-O-beta-D-mannosyl-D-glucose phosphorylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G9_9FIRM
Glycoside Hydrolase Family 130 protein
L3_105_000M1_scaffold_398_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36245..36697
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX9_9FIRM
nrdR; Transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_398_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36786..38105)
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
lysC; aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAQ5_9FIRM
L3_105_000M1_scaffold_398_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38582..40501)
DNA (1920bp) protein (640aa)
FOG: EAL domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3J4_9FIRM
FOG: EAL domain {ECO:0000313|EMBL:CDC66770.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative signalling protein
L3_105_000M1_scaffold_398_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40973..41221
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66771.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
Displaying items 1-30 of 51 in total

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