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L3_105_000M1_scaffold_410

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_410_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(105..1766)
DNA (1662bp) protein (554aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM8_9FIRM
L3_105_000M1_scaffold_410_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1991..2779)
DNA (789bp) protein (263aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75811.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75811.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM6_9FIRM
Predicted glycosyltransferases
L3_105_000M1_scaffold_410_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2846..3775)
DNA (930bp) protein (310aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM5_9FIRM
L3_105_000M1_scaffold_410_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3886..5103)
DNA (1218bp) protein (406aa)
Putative trigger factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLL2_9FIRM
Putative trigger factor {ECO:0000313|EMBL:EFB76310.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
trigger factor
L3_105_000M1_scaffold_410_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5273..5527
DNA (255bp) protein (85aa)
UPF0291 protein RSAG_00166 n=2 Tax=Ruminococcus RepID=C6J9R6_9FIRM
UPF0291 protein BN806_02382 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_105_000M1_scaffold_410_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5771..7063
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM3_9FIRM
L3_105_000M1_scaffold_410_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7311..8435
DNA (1125bp) protein (375aa)
Cation diffusion facilitator family transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM2_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EFB75807.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cation diffusion facilitator family transporter
L3_105_000M1_scaffold_410_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8572..9747
DNA (1176bp) protein (392aa)
Malic enzyme (EC:1.1.1.38)
Malic enzyme, NAD binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM1_9FIRM
Malic enzyme, NAD binding domain protein {ECO:0000313|EMBL:EFB75806.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_410_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9744..10589
DNA (846bp) protein (282aa)
fumarase alpha subunit (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMM0_9FIRM
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EFB75805.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_410_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10593..10808
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PML9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75804.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_410_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10808..11374
DNA (567bp) protein (189aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PML8_9FIRM
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EFB75803.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_410_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11371..12138
DNA (768bp) protein (256aa)
Sortase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PML7_9FIRM
Sortase family protein {ECO:0000313|EMBL:EFB75802.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LPXTG-site transpeptidase (sortase) family protein
L3_105_000M1_scaffold_410_13
unknown

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12688..12906
DNA (219bp) protein (73aa)
hypothetical protein
L3_105_000M1_scaffold_410_14
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13042..13929
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF01607.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_105_000M1_scaffold_410_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14026..15240
DNA (1215bp) protein (405aa)
SpoIVB peptidase {ECO:0000313|EMBL:EFB76799.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFB76799.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE1_9FIRM
L3_105_000M1_scaffold_410_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15519..16277
DNA (759bp) protein (253aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE0_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_105_000M1_scaffold_410_17
unknown

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16277..16438
DNA (162bp) protein (54aa)

This feature has no annotations

L3_105_000M1_scaffold_410_18
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16667..16903
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28084.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_105_000M1_scaffold_410_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16919..17245
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28083.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_105_000M1_scaffold_410_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17232..17492
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28082.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_105_000M1_scaffold_410_21
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17489..17944
DNA (456bp) protein (152aa)
DNA N-6-adenine-methyltransferase (Dam) n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEW6_9FIRM
DNA N-6-adenine-methyltransferase (Dam) {ECO:0000313|EMBL:EDS09899.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
phage N-6-adenine-methyltransferase
L3_105_000M1_scaffold_410_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17932..18624
DNA (693bp) protein (231aa)
DNA modification methylase (EC:2.1.1.72)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
DNA modification methylase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K450_9FIRM
L3_105_000M1_scaffold_410_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18643..19185
DNA (543bp) protein (181aa)
DUTP diphosphatase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIV7_9FIRM
DUTP diphosphatase {ECO:0000313|EMBL:EHO28081.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_105_000M1_scaffold_410_24
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19191..20369
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQ44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88208.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_105_000M1_scaffold_410_25
unknown

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20430..20564
DNA (135bp) protein (45aa)

This feature has no annotations

L3_105_000M1_scaffold_410_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20578..21237
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28079.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_105_000M1_scaffold_410_27
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21227..22294
DNA (1068bp) protein (356aa)
Phosphoadenosine phosphosulfate reductase family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D7D7_9CLOT
Phosphoadenosine phosphosulfate reductase family protein {ECO:0000313|EMBL:EEG52749.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
class V aminotransferase
L3_105_000M1_scaffold_410_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22658..23518
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28068.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_105_000M1_scaffold_410_29
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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23535..23807
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40015.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_105_000M1_scaffold_410_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23813..24379
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28067.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
HD domain.
Displaying items 1-30 of 84 in total

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