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L3_105_000M1_scaffold_449

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_449_1
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1375)
DNA (1374bp) protein (458aa)
Ig-like domain-containing surface protein n=1 Tax=Prevotella sp. CAG:873 RepID=R7J0T7_9BACT
Leucine rich repeat protein {ECO:0000313|EMBL:CCZ83106.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
cell surface protein
L3_105_000M1_scaffold_449_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1618..1806)
DNA (189bp) protein (63aa)
Small acid-soluble spore protein alpha/beta type n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UCB9_RUMA7
Alpha/beta hydrolase {ECO:0000313|EMBL:EXM39276.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
small acid-soluble spore protein alpha/beta type
L3_105_000M1_scaffold_449_3
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1964..2341)
DNA (378bp) protein (126aa)
Putative cell wall binding repeat 2 n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EQM5_9FIRM
Putative cell wall binding repeat 2 {ECO:0000313|EMBL:CDE04965.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_105_000M1_scaffold_449_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2367..3698)
DNA (1332bp) protein (444aa)
Collagen triple helix repeat (20 copies) n=2 Tax=root RepID=R5DFV9_9FIRM
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CCO04313.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_449_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3782..4366)
DNA (585bp) protein (195aa)
Transcriptional regulator TetR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6D2_9FIRM
Transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCO04314.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_449_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4663..5127
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67764.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_449_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5203..9360
DNA (4158bp) protein (1386aa)
secreted Cysteine protease (EC:3.4.22.-)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2T9_9FIRM
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:CDC67763.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_449_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9419..10033)
DNA (615bp) protein (205aa)
Maltose acetyltransferase / transferase hexapeptide repeat multi-domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAD4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04318.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_449_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10229..10411)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67761.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_449_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10803..12089
DNA (1287bp) protein (429aa)
Putative polysaccharide biosynthesis protein YvfE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6C7_9FIRM
Putative polysaccharide biosynthesis protein YvfE {ECO:0000313|EMBL:CDC67760.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
aminotransferase family protein
L3_105_000M1_scaffold_449_11
Butyrivibrio fibrisolvens, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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12089..12703
DNA (615bp) protein (205aa)
Sugar transferases involved in lipopolysaccharide synthesis n=1 Tax=Butyrivibrio fibrisolvens 16/4 RepID=D4IWZ0_BUTFI
Sugar transferases involved in lipopolysaccharide synthesis
Sugar transferases involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:CBK75283.1}; TaxID=657324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio fibrisolvens 16/4.;"
L3_105_000M1_scaffold_449_12
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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12703..13305
DNA (603bp) protein (201aa)
Sugar O-acyltransferase sialic acid O-acetyltransferase NeuD family n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EG21_9FIRM
Sugar O-acyltransferase sialic acid O-acetyltransferase NeuD family {ECO:0000313|EMBL:CCX91353.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
wecD; Acetyltransferase
L3_105_000M1_scaffold_449_13
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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13302..14390
DNA (1089bp) protein (363aa)
Galacturonosyl transferase n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CFM7_9FIRM
Galacturonosyl transferase {ECO:0000313|EMBL:CDA64002.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
Glycosyltransferase
L3_105_000M1_scaffold_449_14
Bacteroides sp. CAG:709, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14514..15794
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:709 RepID=R6EEY6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDA95869.1}; TaxID=1262748 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:709.;"
hypothetical protein
L3_105_000M1_scaffold_449_15
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15818..16927
DNA (1110bp) protein (370aa)
Putative polysaccharide polymerase protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q068_9FIRM
Putative polysaccharide polymerase protein {ECO:0000313|EMBL:CCZ19744.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
capsular polysaccharide biosynthesis protein YveQ
L3_105_000M1_scaffold_449_16
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16932..18125
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PU73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ19743.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_105_000M1_scaffold_449_17
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18122..19267
DNA (1146bp) protein (382aa)
Glycosyltransferase group 1 family protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EW62_9FIRM
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDE06661.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
glycosyl transferase 4
L3_105_000M1_scaffold_449_18
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19310..20416
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JJH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY52929.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
polysaccharide pyruvyl transferase
L3_105_000M1_scaffold_449_19
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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20394..21527
DNA (1134bp) protein (378aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3X1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDS74355.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
coenzyme F420-reducing hydrogenase, beta subunit
L3_105_000M1_scaffold_449_20
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21548..23062
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YT60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA19817.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
virulence factor MviN family protein
L3_105_000M1_scaffold_449_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23218..24252
DNA (1035bp) protein (345aa)
Capsular polysaccharide biosynthesis protein Cps4J n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6B5_9FIRM
Capsular polysaccharide biosynthesis protein Cps4J {ECO:0000313|EMBL:CDC67745.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
capsular polysaccharide biosynthesis protein capD
L3_105_000M1_scaffold_449_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24254..24763
DNA (510bp) protein (170aa)
Sugar O-acyltransferase sialic acid O-acetyltransferase NeuD family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDH5_9FIRM
Sugar O-acyltransferase sialic acid O-acetyltransferase NeuD family {ECO:0000313|EMBL:CDC67744.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_449_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24803..25993
DNA (1191bp) protein (397aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2S2_9FIRM
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CDC67743.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_449_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26007..27200
DNA (1194bp) protein (398aa)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAB4_9FIRM
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CDC67742.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Nucleoside-diphosphate-sugar epimerases
L3_105_000M1_scaffold_449_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27200..27658
DNA (459bp) protein (153aa)
putative (di)nucleoside polyphosphate hydrolase (EC:3.6.1.-)
Putative (Di)nucleoside polyphosphate hydrolase {ECO:0000313|EMBL:CCO04337.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO04337.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6B2E7_9CLOT
L3_105_000M1_scaffold_449_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27672..29510
DNA (1839bp) protein (613aa)
glmS; L-glutamine:D-fructose-6-phosphate isomerase (deaminating) (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000313|EMBL:CCO04338.1};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LD95_9FIRM
L3_105_000M1_scaffold_449_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29461..29946
DNA (486bp) protein (162aa)
Glycopeptide antibiotics resistance protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZU8_9FIRM
Glycopeptide antibiotics resistance protein {ECO:0000313|EMBL:CDC66728.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_449_28
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

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30326..30736
DNA (411bp) protein (137aa)
Hemagglutinin-related protein (Fragment) n=1 Tax=Anoxybacillus sp. SK3-4 RepID=T0CCU8_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KJS15278.1}; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
rhsA; Rhs family protein
L3_105_000M1_scaffold_449_29
unknown

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30746..31273
DNA (528bp) protein (176aa)

This feature has no annotations

L3_105_000M1_scaffold_449_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31525..32616)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A9I6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04342.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 54 in total

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