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L3_105_000M1_scaffold_477

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_477_1
Lachnoanaerobaculum sp. OBRC5-5, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(96..740)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XJT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJZ70981.1}; TaxID=936595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. OBRC5-5.;"
Type III restriction-modification system methylation subunit
L3_105_000M1_scaffold_477_2
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(752..3370)
DNA (2619bp) protein (873aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AY20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81671.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
helicase
L3_105_000M1_scaffold_477_3
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3360..4643)
DNA (1284bp) protein (428aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Cytosine-specific methyltransferase n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AY21_9FIRM
Modification methylase
L3_105_000M1_scaffold_477_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4775..4981)
DNA (207bp) protein (69aa)
Predicted transcriptional regulator n=1 Tax=Clostridium nexile CAG:348 RepID=R6PP47_9CLOT
Predicted transcriptional regulator {ECO:0000313|EMBL:CDC22594.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulator
L3_105_000M1_scaffold_477_5

Not on your lists

comp(5295..6245)
DNA (951bp) protein (317aa)
Transposase n=1 Tax=gut metagenome RepID=J9G4L9_9ZZZZ
Transposase {ECO:0000313|EMBL:EJX02147.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
Integrase core domain.
L3_105_000M1_scaffold_477_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6466..7635
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JUE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61401.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
L3_105_000M1_scaffold_477_7
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7598..9856
DNA (2259bp) protein (753aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0B9S8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ41769.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
L3_105_000M1_scaffold_477_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(9962..11125)
DNA (1164bp) protein (388aa)
Transposase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MM93_9FIRM
Transposase {ECO:0000313|EMBL:CDC00773.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
transposase
L3_105_000M1_scaffold_477_9
unknown

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comp(11220..11369)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_105_000M1_scaffold_477_10
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11413..12933
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0AZ99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ41768.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
integrase protein
L3_105_000M1_scaffold_477_11
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12930..13310
DNA (381bp) protein (127aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9V789_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJR44484.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
L3_105_000M1_scaffold_477_12
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13360..14289)
DNA (930bp) protein (310aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S1U0_DESTD
L3_105_000M1_scaffold_477_13
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14291..15082)
DNA (792bp) protein (264aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|SAAS:SAAS00176990}; EC=6.4.1.- {ECO:0000256|SAAS:SAAS00275530};; EC=6.4.1.2 {ECO:0000256|SAAS:SAAS00057486};; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
acetyl-CoA carboxylase, carboxyl transferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Clostridium sp. CAG:557 RepID=R6HB80_9CLOT
L3_105_000M1_scaffold_477_14
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15092..15688)
DNA (597bp) protein (199aa)
Biotin carboxylase n=1 Tax=Clostridium sp. CAG:557 RepID=R6GGB8_9CLOT
Biotin carboxylase {ECO:0000313|EMBL:CDB23460.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
acetyl-CoA carboxylase, carboxyl transferase subunit beta
L3_105_000M1_scaffold_477_15
GWF2_RBX1_35_9_curated, RBX1, Bacteria

Not on your lists

comp(15730..17373)
DNA (1644bp) protein (548aa)
Bacillorin synthetase b id=4160784 bin=GWF2_OP9_related_35_9 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
dhbF; dimodular nonribosomal peptide synthase DhbF
Tax=GWF2_RBX1_35_9_curated
L3_105_000M1_scaffold_477_16
unknown

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comp(17381..18331)
DNA (951bp) protein (317aa)

This feature has no annotations

L3_105_000M1_scaffold_477_17
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18363..19967)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K214_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS37542.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_105_000M1_scaffold_477_18
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19957..21534)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N1ZTY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ20467.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_105_000M1_scaffold_477_19
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21531..22832)
DNA (1302bp) protein (434aa)
Metallo cofactor biosynthesis protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6LUS1_9CLOT
Metallo cofactor biosynthesis protein {ECO:0000313|EMBL:CDB91163.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
radical SAM additional 4Fe4S-binding domain-containing protein
L3_105_000M1_scaffold_477_20
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22839..24245)
DNA (1407bp) protein (469aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6M5N4_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CDB91164.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
radical SAM protein
L3_105_000M1_scaffold_477_21
unknown

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comp(24250..24501)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_105_000M1_scaffold_477_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(24705..26099)
DNA (1395bp) protein (465aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
L3_105_000M1_scaffold_477_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26729..27181)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74623.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_477_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27339..27659
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A6 RepID=R0CWM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ61142.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Predicted transcriptional regulator with C-terminal CBS domains
L3_105_000M1_scaffold_477_25
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(27839..28096)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7K0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74799.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
HTH domain-containing protein
L3_105_000M1_scaffold_477_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28083..30020)
DNA (1938bp) protein (646aa)
Type IV secretory pathway, VirD4 components n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9I1_9FIRM
Type IV secretory pathway, VirD4 components
Type IV secretory pathway, VirD4 components {ECO:0000313|EMBL:CBL16276.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_477_27
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29999..30928)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5N7D0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCY93067.1}; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
hypothetical protein
L3_105_000M1_scaffold_477_28
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30939..33137)
DNA (2199bp) protein (733aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KNY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY66799.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Sel1 repeat.
L3_105_000M1_scaffold_477_29
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33144..33548)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24NG8_DESHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJR47100.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
L3_105_000M1_scaffold_477_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33932..34606)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSZ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96211.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying items 1-30 of 86 in total

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