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L3_105_000M1_scaffold_482

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_482_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1331
DNA (1329bp) protein (443aa)
ntpI; V-type H+-transporting ATPase, subunit I (EC:3.6.3.14)
V-type ATPase 116kDa subunit family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4L8_9FIRM
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1476..1925
DNA (450bp) protein (150aa)
ntpK; V-type H+-transporting ATPase, subunit K (EC:3.6.3.14)
V-type H+-transporting ATPase, subunit K {ECO:0000313|EMBL:CCO05681.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCO05681.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP synthase subunit C n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBT1_9FIRM
L3_105_000M1_scaffold_482_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1966..2235
DNA (270bp) protein (90aa)
ntpF; V-type H+-transporting ATPase, subunit F (EC:3.6.3.14)
V-type H+-transporting ATPase, subunit F {ECO:0000313|EMBL:CCO05680.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCO05680.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP synthase subunit F n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T114_9FIRM
L3_105_000M1_scaffold_482_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2255..2836
DNA (582bp) protein (194aa)
ntpE; V-type H+-transporting ATPase, subunit E (EC:3.6.3.14)
V-type proton ATPase subunit E n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8M2_9FIRM
V-type proton ATPase subunit E {ECO:0000313|EMBL:CDC67132.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2850..4613
DNA (1764bp) protein (588aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ntpA; V-type H+-transporting ATPase, subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGY5_9FIRM
L3_105_000M1_scaffold_482_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4610..6013
DNA (1404bp) protein (468aa)
ntpB; V-type H+-transporting ATPase, subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4L5_9FIRM
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6259..6885
DNA (627bp) protein (209aa)
ntpD; V-type H+-transporting ATPase, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBS6_9FIRM
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7097..7699
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8L6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05673.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7997..10078
DNA (2082bp) protein (694aa)
glnN; Glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase catalytic region n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGY1_9FIRM
Glutamine synthetase catalytic region {ECO:0000313|EMBL:CDC67126.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10254..12026
DNA (1773bp) protein (591aa)
Nitrogen regulatory protein P-II n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4L0_9FIRM
amt2; Ammonium transporter
Ammonium transporter {ECO:0000313|EMBL:CCO05671.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12449..14227)
DNA (1779bp) protein (593aa)
aspS; Aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBS3_9FIRM
Aspartate--tRNA ligase 1 {ECO:0000313|EMBL:CDC67124.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_12
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14229..14930)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EW51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01384.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
FIG01109761: hypothetical protein
L3_105_000M1_scaffold_482_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15103..15621)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T106_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05669.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15621..15935)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8L2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67122.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_482_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15939..17267)
DNA (1329bp) protein (443aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGX7_9FIRM
L3_105_000M1_scaffold_482_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17414..18049)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4K6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05666.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_17
unknown

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comp(18213..18353)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_105_000M1_scaffold_482_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18377..18784)
DNA (408bp) protein (136aa)
mgsA; Methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Methylglyoxal synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBR8_9FIRM
L3_105_000M1_scaffold_482_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18893..19630)
DNA (738bp) protein (246aa)
Site-determining protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T103_9FIRM
minD; septum site-determining protein MinD
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20090..20545
DNA (456bp) protein (152aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8K8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05663.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20750..21475
DNA (726bp) protein (242aa)
rsuA; Ribosomal small subunit pseudouridine synthase A (EC:5.4.99.12)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Pseudouridine synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGX5_9FIRM
L3_105_000M1_scaffold_482_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21629..22771
DNA (1143bp) protein (381aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO05661.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO05661.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4K3_9FIRM
L3_105_000M1_scaffold_482_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22884..24131
DNA (1248bp) protein (416aa)
Lipolytic protein G-D-S-L family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBR4_9FIRM
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:CDC67114.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_482_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24536..26104
DNA (1569bp) protein (523aa)
cls2; Cardiolipin synthase (EC:2.7.8.-)
Phospholipase D/Transphosphatidylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0Z9_9FIRM
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:CDC67113.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_105_000M1_scaffold_482_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26175..27059
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8K5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67112.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_482_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27072..27719
DNA (648bp) protein (216aa)
HAD hydrolase family IA variant 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGX1_9FIRM
HAD hydrolase family IA variant 3 {ECO:0000313|EMBL:CDC67111.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_105_000M1_scaffold_482_27
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28352..28501
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=4 Tax=Ruminococcus RepID=E6UFR4_RUMA7
rpmG; ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L3_105_000M1_scaffold_482_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28523..28777
DNA (255bp) protein (85aa)
Protein translocase subunit SecE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBR0_9FIRM
secE; Preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28822..29352
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0Z6_9FIRM
nusG; Transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_482_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29492..29917
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8K1_9FIRM
rplK; ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 74 in total

View Taxonomy