ggKbase home page

L3_105_000M1_scaffold_506

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_506_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..223
DNA (222bp) protein (74aa)
Ketopantoate reductase PanE/ApbA n=2 Tax=Faecalibacterium prausnitzii RepID=A8SH81_9FIRM
Ketopantoate reductase
Ketopantoate reductase PanE/ApbA {ECO:0000313|EMBL:EDP20485.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_105_000M1_scaffold_506_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

220..852
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07368.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_105_000M1_scaffold_506_3
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

849..1028
DNA (180bp) protein (60aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EIR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97189.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Na+/melibiose symporter and related transporter-like protein
L3_105_000M1_scaffold_506_4
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1142..3841
DNA (2700bp) protein (900aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6E9G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97188.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
cell wall surface anchor family protein
L3_105_000M1_scaffold_506_5
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4386..4517
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LXJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY83933.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_105_000M1_scaffold_506_6
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4557..6134
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GP16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26145.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
resolvase family site-specific recombinase
L3_105_000M1_scaffold_506_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6523..6891
DNA (369bp) protein (123aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD2_9FIRM
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EFB75394.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Penicillinase repressor.
L3_105_000M1_scaffold_506_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6958..8121)
DNA (1164bp) protein (388aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB75393.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB75393.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD1_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L3_105_000M1_scaffold_506_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8336..8830
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75392.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8934..10064
DNA (1131bp) protein (377aa)
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC9_9FIRM
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase {ECO:0000313|EMBL:EFB75391.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
TDP-4-oxo-6-deoxy-D-glucose transaminase
L3_105_000M1_scaffold_506_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10054..11544
DNA (1491bp) protein (497aa)
Tat pathway signal sequence domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC8_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFB75390.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11659..12198
DNA (540bp) protein (180aa)
Acetyltransferase, GNAT family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC7_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFB75389.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pseudaminic acid biosynthesis N-acetyl transferase
L3_105_000M1_scaffold_506_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12195..13712
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75388.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13729..14670
DNA (942bp) protein (314aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75387.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75387.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC5_9FIRM
glycosyl transferase 2
L3_105_000M1_scaffold_506_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14667..15026
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75386.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
EamA-like transporter family.
L3_105_000M1_scaffold_506_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15023..15370
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75385.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
membrane protein
L3_105_000M1_scaffold_506_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15510..16172)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75382.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
PAP2 superfamily.
L3_105_000M1_scaffold_506_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16415..18061)
DNA (1647bp) protein (549aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ15_9FIRM
L3_105_000M1_scaffold_506_19
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18214..21063)
DNA (2850bp) protein (950aa)
Autoinducer 2 sensor kinase/phosphatase LuxQ {ECO:0000313|EMBL:KJJ71513.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KJJ71513.1};; EC=3.1.3.- {ECO:0000313|EMBL:KJJ71513.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
amino acid-binding domain sensor hybrid histidine kinase (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HTA7_9CLOT
L3_105_000M1_scaffold_506_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21144..21488)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IA46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48351.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
FOG: HPt domain
L3_105_000M1_scaffold_506_21
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21569..23311)
DNA (1743bp) protein (581aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MH32_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EOS70021.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
diguanylate cyclase (GGDEF) domain
L3_105_000M1_scaffold_506_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23327..23965)
DNA (639bp) protein (213aa)
Tat pathway signal sequence domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ03_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFB75195.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23962..25092)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75196.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25061..26101)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75196.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26267..26890)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75197.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26891..28885)
DNA (1995bp) protein (665aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75198.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_506_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29052..30734)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75199.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_506_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30841..31824)
DNA (984bp) protein (328aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ08_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EFB75200.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
nucleoside-diphosphate-sugar epimerase
L3_105_000M1_scaffold_506_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31999..32469)
DNA (471bp) protein (157aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ09_9FIRM
L3_105_000M1_scaffold_506_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32466..33398)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75202.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 74 in total

View Taxonomy