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L3_105_000M1_scaffold_534

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_534_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..522
DNA (522bp) protein (174aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=C6J8H1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD19489.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_105_000M1_scaffold_534_2
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(366..1757)
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A4Q5_9CLOT
Signal transduction histidine kinase
L3_105_000M1_scaffold_534_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1759..2463)
DNA (705bp) protein (235aa)
RumR protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N0M6_9CLOT
RumR protein {ECO:0000313|EMBL:CDC05503.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_105_000M1_scaffold_534_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2619..3374
DNA (756bp) protein (252aa)
ABC-type multidrug transport system ATPase component n=1 Tax=Clostridium leptum CAG:27 RepID=R6NH51_9CLOT
ABC-type multidrug transport system ATPase component {ECO:0000313|EMBL:CDC05501.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ABC-type multidrug transport system, ATPase component
L3_105_000M1_scaffold_534_5
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3371..4093
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NB59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05499.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_105_000M1_scaffold_534_6
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4090..4860
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6P6H1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05497.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_105_000M1_scaffold_534_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4866..5153
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N377_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05495.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_105_000M1_scaffold_534_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5307..6950)
DNA (1644bp) protein (548aa)
cell surface protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3724F
Dockerin type I repeat.
Uncharacterized protein {ECO:0000313|EMBL:ERJ94958.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_105_000M1_scaffold_534_9
unknown

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7485..7610
DNA (126bp) protein (42aa)

This feature has no annotations

L3_105_000M1_scaffold_534_10
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8323..8748
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8I3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG32192.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_534_11
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9041..9922
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H046_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE32353.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_105_000M1_scaffold_534_12
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10030..10659
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:492 RepID=R5YWC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA31105.1}; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_534_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10697..11776)
DNA (1080bp) protein (360aa)
hemN; putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37CED
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDF01832.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L3_105_000M1_scaffold_534_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11773..12093)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LZS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ92543.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_105_000M1_scaffold_534_15
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12106..13908)
DNA (1803bp) protein (601aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Elongation factor 4 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMH7_9FIRM
lepA; GTP-binding protein lepA
L3_105_000M1_scaffold_534_16
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14110..14553
DNA (444bp) protein (148aa)
ACT domain-containing protein (EC:5.4.99.5)
ACT domain-containing protein n=2 Tax=Ruminococcus RepID=D4LDP2_RUMC1
ACT domain-containing protein {ECO:0000313|EMBL:CDD54007.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L3_105_000M1_scaffold_534_17
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14578..15795
DNA (1218bp) protein (406aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
homoserine dehydrogenase (EC:1.1.1.3)
homoserine dehydrogenase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37450
L3_105_000M1_scaffold_534_18
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15978..16937
DNA (960bp) protein (320aa)
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.4.- 2.7.11.-)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
HPr kinase/phosphorylase n=2 Tax=Ruminococcus RepID=D4LDP7_RUMC1
L3_105_000M1_scaffold_534_19
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16953..17681
DNA (729bp) protein (243aa)
Histidinol phosphatase and related hydrolases of the PHP family n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZZS7_9FIRM
Histidinol phosphatase and related hydrolases of the PHP family {ECO:0000313|EMBL:CDD54013.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Histidinol phosphatase and related hydrolases of the PHP family
L3_105_000M1_scaffold_534_20
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17701..18612
DNA (912bp) protein (304aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C372F2
L3_105_000M1_scaffold_534_21
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18672..19553
DNA (882bp) protein (294aa)
UPF0042 nucleotide-binding protein BN739_00839 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MID8_9FIRM
Nucleotide-binding protein BN739_00839 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Predicted P-loop-containing kinase
L3_105_000M1_scaffold_534_22
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19572..20501
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FF49_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|SAAS:SAAS00015186}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
hypothetical protein
L3_105_000M1_scaffold_534_23
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20498..23974
DNA (3477bp) protein (1159aa)
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170, ECO:0000313|EMBL:CBL17747.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LDQ2_RUMC1
L3_105_000M1_scaffold_534_24
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24152..25114
DNA (963bp) protein (321aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZZT1_9FIRM
L3_105_000M1_scaffold_534_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25323..25904
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHT5_9FIRM
Protein of unknown function (DUF1393).
Uncharacterized protein {ECO:0000313|EMBL:EDS00946.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_534_26
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26000..26803
DNA (804bp) protein (268aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MID4_9FIRM
L3_105_000M1_scaffold_534_27
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26875..27495
DNA (621bp) protein (207aa)
Integral membrane protein DUF95 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJQ6_9FIRM
Integral membrane protein DUF95 {ECO:0000313|EMBL:CDF00855.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_534_28
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27516..28421
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00856.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_105_000M1_scaffold_534_29
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28557..28823
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMS3_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
SSU ribosomal protein S15P
L3_105_000M1_scaffold_534_30
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28899..31103
DNA (2205bp) protein (735aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
polyribonucleotide nucleotidyltransferase n=1 Tax=Ruminococcus flavefaciens RepID=UPI00030B2DB7
Displaying items 1-30 of 50 in total

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