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L3_105_000M1_scaffold_541

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_541_1
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(257..424)
DNA (168bp) protein (56aa)
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UPY7_AKKM8
flavoprotein oxygenase
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein {ECO:0000313|EMBL:ACD04522.1}; TaxID=349741 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
L3_105_000M1_scaffold_541_2
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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562..927
DNA (366bp) protein (122aa)
Transcriptional regulator, HxlR family n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UPY6_AKKM8
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACD04521.1}; TaxID=349741 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
L3_105_000M1_scaffold_541_3
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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932..3415
DNA (2484bp) protein (828aa)
Excinuclease ATPase subunit n=1 Tax=Clostridium sp. CAG:448 RepID=R6TXW7_9CLOT
Excinuclease ATPase subunit {ECO:0000313|EMBL:CDC63422.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
Excinuclease ATPase subunit
L3_105_000M1_scaffold_541_4
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(3764..4195)
DNA (432bp) protein (144aa)
Transcriptional regulator TetR family n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H9H0_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDB30201.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_105_000M1_scaffold_541_5
unknown

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comp(4267..4377)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_105_000M1_scaffold_541_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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4543..4854
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H0C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30200.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_105_000M1_scaffold_541_7
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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5085..5813
DNA (729bp) protein (243aa)
Amidohydrolase 2 n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H8F6_9FIRM
Amidohydrolase 2 {ECO:0000313|EMBL:CDB30199.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
amidohydrolase 2
L3_105_000M1_scaffold_541_8
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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5830..6168
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GXK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30198.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_105_000M1_scaffold_541_9
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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6191..6448
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HWM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30197.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
RND family transporter
L3_105_000M1_scaffold_541_10
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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6610..7269
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HWM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30197.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
RND family transporter
L3_105_000M1_scaffold_541_11
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

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7260..7868
DNA (609bp) protein (203aa)
Transcriptional regulator id=2721476 bin=GWF1_Spirochaetes_60_12 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Transcriptional regulator
Tax=GWB1_Spirochaetes_60_80_curated
L3_105_000M1_scaffold_541_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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8035..8871
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40283.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_105_000M1_scaffold_541_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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8831..9721
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IIY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40284.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_105_000M1_scaffold_541_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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9734..11143
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40285.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Predicted membrane protein involved in D-alanine export
L3_105_000M1_scaffold_541_15
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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11157..12353
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40286.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_105_000M1_scaffold_541_16
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(12490..14337)
DNA (1848bp) protein (616aa)
Alpha amylase catalytic domain protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ITZ8_9FIRM
Alpha amylase catalytic domain protein {ECO:0000313|EMBL:CCY40287.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
alpha amylase
L3_105_000M1_scaffold_541_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(14392..16788)
DNA (2397bp) protein (799aa)
Glycogen/starch/alpha-glucan phosphorylase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDV3_9FIRM
Glycogen/starch/alpha-glucan phosphorylase {ECO:0000313|EMBL:CCY40288.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
glycogen/starch/alpha-glucan phosphorylase
L3_105_000M1_scaffold_541_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(16832..18268)
DNA (1437bp) protein (479aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Glycogen synthase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDY4_9FIRM
glycogen synthase
L3_105_000M1_scaffold_541_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(18265..19377)
DNA (1113bp) protein (371aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LW14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87864.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_105_000M1_scaffold_541_20
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(19397..20581)
DNA (1185bp) protein (395aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
glgC; glucose-1-phosphate adenylyltransferase, GlgC subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IIZ4_9FIRM
L3_105_000M1_scaffold_541_21
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(20620..22503)
DNA (1884bp) protein (628aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDY9_9FIRM
L3_105_000M1_scaffold_541_22
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23021..24658
DNA (1638bp) protein (546aa)
AMP-binding enzyme n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DV96_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:CDA92413.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
acyl-CoA synthetase
L3_105_000M1_scaffold_541_23
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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24746..26479
DNA (1734bp) protein (578aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
iorA; indolepyruvate ferredoxin oxidoreductase alpha subunit IorA (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDZ4_9FIRM
L3_105_000M1_scaffold_541_24
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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26497..27069
DNA (573bp) protein (191aa)
Indolepyruvate oxidoreductase subunit beta n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU92_9FIRM
Indolepyruvate oxidoreductase subunit beta {ECO:0000313|EMBL:CCY40301.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
indolepyruvate ferredoxin oxidoreductase, beta subunit
L3_105_000M1_scaffold_541_25
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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27085..28383
DNA (1299bp) protein (433aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU18_9FIRM
hypothetical protein
L3_105_000M1_scaffold_541_26
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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28397..28852
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDW5_9FIRM
ACT domain protein {ECO:0000313|EMBL:CCY40303.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
amino acid-binding ACT domain-containing protein
L3_105_000M1_scaffold_541_27
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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28856..30022
DNA (1167bp) protein (389aa)
Aminotransferase class I/II n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDZ7_9FIRM
Aminotransferase class I/II {ECO:0000313|EMBL:CCY40305.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_105_000M1_scaffold_541_28
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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30126..31181
DNA (1056bp) protein (352aa)
NADP-dependent alcohol dehydrogenase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU98_9FIRM
NADP-dependent alcohol dehydrogenase {ECO:0000313|EMBL:CCY40306.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Alcohol dehydrogenase zinc-binding domain-containing protein
L3_105_000M1_scaffold_541_29
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(31176..32567)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40307.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_105_000M1_scaffold_541_30
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(32681..33814)
DNA (1134bp) protein (378aa)
RNA polymerase sigma factor SigA n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IDW9_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
RpoD family RNA polymerase sigma factor
Displaying items 1-30 of 49 in total

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