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L3_105_000M1_scaffold_563

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_563_1
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..318
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002ECF428
Uncharacterized protein {ECO:0000313|EMBL:CDC63936.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
L3_105_000M1_scaffold_563_2
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

321..2132
DNA (1812bp) protein (604aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYM4_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ23908.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
L3_105_000M1_scaffold_563_3
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2167..4053
DNA (1887bp) protein (629aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002ECF428
Uncharacterized protein {ECO:0000313|EMBL:ETZ23908.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
L3_105_000M1_scaffold_563_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4183..6081
DNA (1899bp) protein (633aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00037750F7
Uncharacterized protein {ECO:0000313|EMBL:CDD12104.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_105_000M1_scaffold_563_5
Mucinivorans hirudinis, Mucinivorans, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6154..7443)
DNA (1290bp) protein (430aa)
Dihydrofolate synthase (EC:6.3.2.12)
Dihydrofolate synthase {ECO:0000313|EMBL:CDN32026.1}; EC=6.3.2.12 {ECO:0000313|EMBL:CDN32026.1};; TaxID=1433126 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Mucinivorans.;" source="Mucinivorans hirudinis.;"
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00036ED000
L3_105_000M1_scaffold_563_6
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7499..9076)
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00035E9015
Uncharacterized protein {ECO:0000313|EMBL:EHB92823.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
apolipoprotein N-acyltransferase
L3_105_000M1_scaffold_563_7
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9179..9841
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003608CED
Uncharacterized protein {ECO:0000313|EMBL:EHB92824.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
threonine efflux protein
L3_105_000M1_scaffold_563_8
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9822..10541
DNA (720bp) protein (240aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002ED5B95
cytidylate kinase
L3_105_000M1_scaffold_563_9
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10526..11389
DNA (864bp) protein (288aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000313D548
L3_105_000M1_scaffold_563_10
unknown

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11437..11652
DNA (216bp) protein (72aa)

This feature has no annotations

L3_105_000M1_scaffold_563_11
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11664..12158
DNA (495bp) protein (165aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003076610
Uncharacterized protein {ECO:0000313|EMBL:EHB92705.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_105_000M1_scaffold_563_12
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12330..13586)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5ZC15_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB48095.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
oxidoreductase
L3_105_000M1_scaffold_563_13
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13612..14535)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H763_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHB92702.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
xylose isomerase
L3_105_000M1_scaffold_563_14
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14563..15912)
DNA (1350bp) protein (450aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H764_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHB92703.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein
L3_105_000M1_scaffold_563_15
Odoribacter sp. CAG:788, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16372..17295)
DNA (924bp) protein (308aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1262909 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter sp. CAG:788.;"
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase (EC:1.8.4.11 1.8.4.12)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Odoribacter sp. CAG:788 RepID=R5NW25_9PORP
L3_105_000M1_scaffold_563_16
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17804..18577)
DNA (774bp) protein (258aa)
Uncharacterized protein n=2 Tax=Odoribacter RepID=R5UYA2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EHP47718.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
hypothetical protein
L3_105_000M1_scaffold_563_17
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18985..20316
DNA (1332bp) protein (444aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
Aspartokinase n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0XIU6_9PORP
amino acid kinase family
L3_105_000M1_scaffold_563_18
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20971..21900)
DNA (930bp) protein (310aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002DEAAEC
tRNA isopentenyltransferase MiaA
L3_105_000M1_scaffold_563_19
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21884..22402)
DNA (519bp) protein (173aa)
Uncharacterized protein n=3 Tax=root RepID=B0MYD3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDS02511.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
Plasmid pRiA4b ORF-3-like protein
L3_105_000M1_scaffold_563_20
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22445..23452)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D3CC09
Uncharacterized protein {ECO:0000313|EMBL:EHB92007.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
NAD-dependent aldehyde dehydrogenase
L3_105_000M1_scaffold_563_21
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23555..24313
DNA (759bp) protein (253aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002EBD1CD
L3_105_000M1_scaffold_563_22
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24431..26275
DNA (1845bp) protein (615aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Transcription termination factor Rho n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H8W8_9BACT
transcription termination factor Rho
L3_105_000M1_scaffold_563_23
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26378..27691)
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002F1519C
Beta-lactamase {ECO:0000313|EMBL:EJF99750.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
beta-lactamase
L3_105_000M1_scaffold_563_24
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27707..30196)
DNA (2490bp) protein (830aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000314EBC3
Uncharacterized protein {ECO:0000313|EMBL:EHB92002.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_105_000M1_scaffold_563_25
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30186..31316)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002E4E6AD
Uncharacterized protein {ECO:0000313|EMBL:EHB92001.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein
L3_105_000M1_scaffold_563_26
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31591..32379
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00037ACBC1
Uncharacterized protein {ECO:0000313|EMBL:EHB91999.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
MazG family protein
L3_105_000M1_scaffold_563_27
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32412..32924
DNA (513bp) protein (171aa)
acetyltransferase n=1 Tax=Alistipes sp. AP11 RepID=UPI0002E9F13A
Uncharacterized protein {ECO:0000313|EMBL:EHB91998.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
carbonic anhydrase, family 3
L3_105_000M1_scaffold_563_28
Alistipes sp. CAG:157, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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32935..33984
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003158E12
Putative regulator of cell autolysis {ECO:0000313|EMBL:CCZ98576.1}; TaxID=1262692 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:157.;"
Putative regulator of cell autolysis
L3_105_000M1_scaffold_563_29
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

33981..36326
DNA (2346bp) protein (782aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003659E1C
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
L3_105_000M1_scaffold_563_30
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36323..37069
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002F0DE63
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDD25259.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
response regulator of the LytR/AlgR family
Displaying items 1-30 of 41 in total

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