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L3_105_000M1_scaffold_604

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_604_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1..246
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A1D3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17350.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_105_000M1_scaffold_604_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

431..1309
DNA (879bp) protein (293aa)
Predicted dinucleotide-utilizing enzyme (EC:1.4.1.21)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A2E4_9PORP
Homoserine dehydrogenase NAD binding domain protein {ECO:0000313|EMBL:CDD14260.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_105_000M1_scaffold_604_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1292..2176)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANQ8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17353.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Lactate dehydrogenase and related dehydrogenases
L3_105_000M1_scaffold_604_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2287..3057
DNA (771bp) protein (257aa)
Tat pathway signal sequence domain protein n=4 Tax=Parabacteroides RepID=A7ABD4_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN87884.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Tat pathway signal sequence domain-containing protein
L3_105_000M1_scaffold_604_5
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3109..3429)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis CL05T12C13 RepID=I9JSL3_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY90019.1}; TaxID=997881 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL05T12C13.;"
L3_105_000M1_scaffold_604_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3735..5390)
DNA (1656bp) protein (552aa)
Amino acid permease n=2 Tax=Parabacteroides merdae RepID=A7ABD5_9PORP
Amino acid permease {ECO:0000313|EMBL:EDN87885.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
cationic amino acid transporter
L3_105_000M1_scaffold_604_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5457..6191)
DNA (735bp) protein (245aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6A0Y3_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD14256.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
oxidoreductase
L3_105_000M1_scaffold_604_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6281..8698
DNA (2418bp) protein (806aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WY48_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD14255.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L3_105_000M1_scaffold_604_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8803..9345
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X535_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14254.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
L3_105_000M1_scaffold_604_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9675..10655
DNA (981bp) protein (327aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNV8_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD14253.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L3_105_000M1_scaffold_604_11
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10724..14194
DNA (3471bp) protein (1157aa)
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EEC96046.1}; Flags: Fragment;; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Putative uncharacterized protein (Fragment) id=2161019 bin=GWA2_Bacteroidetes_42_15 species=Parabacteroides johnsonii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
hypothetical protein
L3_105_000M1_scaffold_604_12
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14207..16000
DNA (1794bp) protein (598aa)
SusD family protein n=2 Tax=Parabacteroides RepID=B7BC02_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79120.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
RagB/SusD domain-containing protein
L3_105_000M1_scaffold_604_13
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16102..18582
DNA (2481bp) protein (827aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=B7BC01_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79119.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L3_105_000M1_scaffold_604_14
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18666..20114
DNA (1449bp) protein (483aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=B7BC00_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79118.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L3_105_000M1_scaffold_604_15
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20193..22058
DNA (1866bp) protein (622aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=B7BBZ9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79117.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
pyridine nucleotide-disulfide oxidoreductase
L3_105_000M1_scaffold_604_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22179..23630
DNA (1452bp) protein (484aa)
Hydrolase alpha/beta domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y0A5_9PORP
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDD11907.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
peptidase S9
L3_105_000M1_scaffold_604_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23652..24485
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WL79_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11908.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative exported alpha-L-fucosidase protein
L3_105_000M1_scaffold_604_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25066..29019
DNA (3954bp) protein (1318aa)
Divergent AAA domain protein n=2 Tax=Parabacteroides merdae RepID=A7ABF0_9PORP
Divergent AAA domain protein {ECO:0000313|EMBL:EDN87900.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATPase AAA
L3_105_000M1_scaffold_604_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29016..30176)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZNX4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17449.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_105_000M1_scaffold_604_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30407..32773
DNA (2367bp) protein (789aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7ABF2_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87902.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_105_000M1_scaffold_604_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32807..35179
DNA (2373bp) protein (791aa)
Uncharacterized protein n=4 Tax=Parabacteroides merdae RepID=K6A157_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17451.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter permease
L3_105_000M1_scaffold_604_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35359..36039
DNA (681bp) protein (227aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5YTD1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17452.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter ATP-binding protein
L3_105_000M1_scaffold_604_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36162..38492
DNA (2331bp) protein (777aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANY9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17453.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter permease
L3_105_000M1_scaffold_604_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38500..39351)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZNX8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17454.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_105_000M1_scaffold_604_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39861..41630)
DNA (1770bp) protein (590aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1N3_9PORP
two-component system sensor histidine kinase
L3_105_000M1_scaffold_604_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41751..42437)
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=3 Tax=Parabacteroides RepID=A7AFS9_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD13705.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L3_105_000M1_scaffold_604_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42542..43387)
DNA (846bp) protein (282aa)
Histidinol phosphate phosphatase HisJ family protein n=2 Tax=Parabacteroides merdae RepID=K6BD64_9PORP
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:EKN17457.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
histidinol-phosphatase
L3_105_000M1_scaffold_604_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(43531..44721)
DNA (1191bp) protein (397aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
Glycine C-acetyltransferase n=3 Tax=Parabacteroides RepID=A7AFT1_9PORP
L3_105_000M1_scaffold_604_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44761..44898)
DNA (138bp) protein (46aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZNY2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13379.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_105_000M1_scaffold_604_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

44962..45915
DNA (954bp) protein (318aa)
NAD dependent epimerase/dehydratase family protein n=4 Tax=Parabacteroides RepID=A7AFT2_9PORP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CDD13380.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
epimerase/reductase
Displaying items 1-30 of 35 in total

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