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L3_105_000M1_scaffold_802

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_802_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1393
DNA (1392bp) protein (464aa)
Type IV secretory pathway, VirD4 components n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H5_9FIRM
Type IV secretory pathway, VirD4 components
Type IV secretory pathway, VirD4 components {ECO:0000313|EMBL:CBL15920.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1407..1757
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15921.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1775..1990
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15922.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2066..2902
DNA (837bp) protein (279aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R5P647_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ05251.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L3_105_000M1_scaffold_802_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2964..3806
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H8_9FIRM
Domain of unknown function (DUF3560).
Uncharacterized protein {ECO:0000313|EMBL:CBL15923.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_6
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3821..4168
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DBP6_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERJ00225.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_105_000M1_scaffold_802_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4165..6510
DNA (2346bp) protein (782aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBL15924.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Domain of unknown function DUF87.
L3_105_000M1_scaffold_802_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6536..7336
DNA (801bp) protein (267aa)
Sortase, SrtB family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8I0_9FIRM
sortase, SrtB family
Sortase, SrtB family {ECO:0000313|EMBL:CBL15925.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_9
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7326..8120
DNA (795bp) protein (265aa)
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCM3_RUMC1
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes {ECO:0000313|EMBL:CBL17368.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_105_000M1_scaffold_802_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8108..9865
DNA (1758bp) protein (586aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8I1_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL15926.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
hypothetical protein
L3_105_000M1_scaffold_802_11
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10128..10571
DNA (444bp) protein (148aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1L258_CLOBM
Transcriptional regulator {ECO:0000313|EMBL:EXG85942.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
MarR family transcriptional regulator
L3_105_000M1_scaffold_802_12
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10606..11160
DNA (555bp) protein (185aa)
Dihydrofolate reductase n=47 Tax=Firmicutes RepID=C9BIV2_ENTFC
riboflavin biosynthesis protein RibD protein
Riboflavin biosynthesis protein RibD protein {ECO:0000313|EMBL:EJY38845.1}; TaxID=1134810 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 511.;"
L3_105_000M1_scaffold_802_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11165..11338
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KJG0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05021.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_802_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11715..12155
DNA (441bp) protein (147aa)
Transcriptional regulatory protein n=3 Tax=Clostridiales RepID=C4ZFK6_EUBR3
transcriptional regulatory protein
Transcriptional regulatory protein {ECO:0000313|EMBL:ACR77278.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_105_000M1_scaffold_802_15
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12349..13218)
DNA (870bp) protein (290aa)
LysR substrate binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFB5_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEG29843.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
transcriptional regulator, LysR family
L3_105_000M1_scaffold_802_16
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13351..14151
DNA (801bp) protein (267aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UL81_AKKM8
Phenazine biosynthesis protein {ECO:0000313|EMBL:AKG33866.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
phenazine biosynthesis protein PhzF family
L3_105_000M1_scaffold_802_17
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14148..14741
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CP72_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78488.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
maltose acetyltransferase
L3_105_000M1_scaffold_802_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14748..15968
DNA (1221bp) protein (407aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFB1_9CLOT
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEG29839.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
major facilitator transporter
L3_105_000M1_scaffold_802_19
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16079..16414
DNA (336bp) protein (112aa)
Transcriptional regulatory protein n=3 Tax=Clostridiales RepID=C4ZFK6_EUBR3
transcriptional regulatory protein
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK80943.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_105_000M1_scaffold_802_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16981..17451
DNA (471bp) protein (157aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8I9_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:CBL15934.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_21
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17766..18047
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Ruminococcaceae RepID=R7ERL3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17376.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_105_000M1_scaffold_802_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18088..18612
DNA (525bp) protein (175aa)
Growth inhibitor n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8J0_9FIRM
Growth inhibitor
Growth inhibitor {ECO:0000313|EMBL:CBL15935.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_802_23
unknown

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18624..18821
DNA (198bp) protein (66aa)

This feature has no annotations

L3_105_000M1_scaffold_802_24
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18793..20088
DNA (1296bp) protein (432aa)
Site-specific recombinase, phage integrase family n=1 Tax=Clostridium sp. M62/1 RepID=D4CDA2_9CLOT
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFE12316.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Site-specific recombinase XerD
L3_105_000M1_scaffold_802_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20288..20917
DNA (630bp) protein (210aa)
dihydrodipicolinate reductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37515
Uncharacterized protein {ECO:0000313|EMBL:KGF56209.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative NADH-flavin reductase
L3_105_000M1_scaffold_802_26
unknown

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20986..21147
DNA (162bp) protein (54aa)

This feature has no annotations

L3_105_000M1_scaffold_802_27
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21144..21596
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UCV6_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU22785.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_105_000M1_scaffold_802_28
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21601..22362
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37D28
Appr-1-p processing protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:ADU22786.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_105_000M1_scaffold_802_29
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22316..23185
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI000311E15C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU22787.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_105_000M1_scaffold_802_30
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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23307..24182
DNA (876bp) protein (292aa)
Phage protein Gp37/Gp68 n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N0A4_9FIRM
Phage protein Gp37/Gp68 {ECO:0000313|EMBL:CDB99781.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
Displaying items 1-30 of 47 in total

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