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L3_105_000M1_scaffold_827

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_827_1
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..233)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PVZ0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CDF28717.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
L3_105_000M1_scaffold_827_2
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(246..656)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9ACX9_METSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEE41319.1}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
L3_105_000M1_scaffold_827_3
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1150..1380)
DNA (231bp) protein (77aa)
Putative snRNP Sm-like protein n=4 Tax=Methanobrevibacter RepID=A5UJK9_METS3
small nuclear ribonucleoprotein
Putative snRNP Sm-like protein {ECO:0000256|HAMAP-Rule:MF_00257}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L3_105_000M1_scaffold_827_4
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1689..1880)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=D2ZRR1_METSM
Uncharacterized protein {ECO:0000313|EMBL:EFC92511.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_5
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


1906..2388
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PTL5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CDF28720.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
putative RNA-binding protein
L3_105_000M1_scaffold_827_6
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

2402..3094
DNA (693bp) protein (231aa)
2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase {ECO:0000256|HAMAP-Rule:MF_02116}; Short=FAPy deformylase {ECO:0000256|HAMAP-Rule:MF_02116};; EC=3.5.1.102 {ECO:0000256|HAMAP-Rule:MF_02116};; Formamide hydrolase {ECO:0000256|HAMAP-Rule:MF_02116}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase n=2 Tax=Methanobrevibacter smithii RepID=ARFB_METS3
creatinine amidohydrolase
L3_105_000M1_scaffold_827_7
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3108..3476)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Methanobrevibacter smithii RepID=UPI00037392C0
Uncharacterized protein {ECO:0000313|EMBL:CDF28722.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
L3_105_000M1_scaffold_827_8
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

3550..4152
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=A5UJL3_METS3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ86391.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L3_105_000M1_scaffold_827_9
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4164..4283)
DNA (120bp) protein (40aa)
Rubredoxin n=4 Tax=Methanobrevibacter RepID=A5UJL4_METS3
rubredoxin
Rubredoxin {ECO:0000256|RuleBase:RU003820}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
L3_105_000M1_scaffold_827_10
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4331..4489)
DNA (159bp) protein (53aa)
Rubredoxin n=4 Tax=Methanobrevibacter RepID=A5UJL5_METS3
rubredoxin
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_11
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4601..5215)
DNA (615bp) protein (205aa)
acetyl/acyl transferase related protein (EC:2.3.1.89)
Bacterial transferase hexapeptide repeat protein n=3 Tax=Methanobrevibacter RepID=B9ACW8_METSM
Transferase hexapeptide repeat-containing domain protein {ECO:0000313|EMBL:CDF28726.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_12
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

5325..6356
DNA (1032bp) protein (344aa)
ATPase n=1 Tax=Methanobrevibacter smithii RepID=UPI00036A76EA
Uncharacterized protein {ECO:0000313|EMBL:EFC92519.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
ATPase
L3_105_000M1_scaffold_827_13
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

6377..6598
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=D2ZRS0_METSM
Uncharacterized protein {ECO:0000313|EMBL:EFC92520.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
hypothetical protein
L3_105_000M1_scaffold_827_14
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6595..8013)
DNA (1419bp) protein (473aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
argininosuccinate lyase (EC:4.3.2.1)
argininosuccinate lyase n=1 Tax=Methanobrevibacter smithii RepID=UPI000368D604
L3_105_000M1_scaffold_827_15
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8072..8227)
DNA (156bp) protein (52aa)
30S ribosomal protein S27ae n=4 Tax=Methanobrevibacter RepID=A5UJM0_METS3
ribosomal protein S27ae
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_16
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8238..8546)
DNA (309bp) protein (103aa)
30S ribosomal protein S24e n=4 Tax=Methanobrevibacter RepID=RS24_METS3
rps24e; 30S ribosomal protein S24e
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_17
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8560..9099)
DNA (540bp) protein (180aa)
UPF0218 protein METSMIALI_00184 n=2 Tax=Methanobrevibacter smithii RepID=B9ACW2_METSM
UPF0218 protein METSMIF1_03558 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
hypothetical protein
L3_105_000M1_scaffold_827_18
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9081..9257)
DNA (177bp) protein (59aa)
DNA-dependent RNA polymerase, subunit E, RpoE (EC:2.7.7.6)
Transcription elongation factor Spt4 n=4 Tax=Methanobrevibacter RepID=A5UJM3_METS3
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_19
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(9254..9811)
DNA (558bp) protein (186aa)
DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-dependent RNA polymerase, subunit E, RpoE n=4 Tax=Methanobrevibacter RepID=A5UJM4_METS3
DNA-dependent RNA polymerase subunit E RpoE {ECO:0000313|EMBL:CDF28734.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_20
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9831..10358)
DNA (528bp) protein (176aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
inorganic pyrophosphatase (EC:3.6.1.1)
inorganic pyrophosphatase n=1 Tax=Methanobrevibacter smithii RepID=UPI00037D6819
L3_105_000M1_scaffold_827_21
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10406..10798)
DNA (393bp) protein (131aa)
Uncharacterized protein n=3 Tax=Methanobrevibacter RepID=D2ZRS8_METSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF28736.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_22
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(10808..12022)
DNA (1215bp) protein (405aa)
Translation initiation factor 2 subunit gamma n=3 Tax=Methanobrevibacter smithii RepID=A5UJM7_METS3
translation initiation factor IF-2 subunit gamma
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_23
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(12089..12475)
DNA (387bp) protein (129aa)
30S ribosomal protein S6e n=4 Tax=Methanobrevibacter RepID=RS6E_METS3
30S ribosomal protein S6e
30S ribosomal protein S6e {ECO:0000256|HAMAP-Rule:MF_00512, ECO:0000256|SAAS:SAAS00018829}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
L3_105_000M1_scaffold_827_24
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12517..14307)
DNA (1791bp) protein (597aa)
Probable translation initiation factor IF-2 n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9ACV5_METSM
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
translation initiation factor IF-2
L3_105_000M1_scaffold_827_25
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14325..14777)
DNA (453bp) protein (151aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000255|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000255|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000255|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000255|HAMAP-Rule:MF_00451}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Nucleoside diphosphate kinase n=3 Tax=Methanobrevibacter RepID=NDK_METS3
L3_105_000M1_scaffold_827_26
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14774..14935)
DNA (162bp) protein (54aa)
50S ribosomal protein L24e n=4 Tax=Methanobrevibacter RepID=RL24E_METS3
50S ribosomal protein L24e
50S ribosomal protein L24e {ECO:0000255|HAMAP-Rule:MF_00773}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L3_105_000M1_scaffold_827_27
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(14950..15156)
DNA (207bp) protein (69aa)
30S ribosomal protein S28e n=4 Tax=Methanobrevibacter RepID=A5UJN2_METS3
rps28e; 30S ribosomal protein S28e
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_28
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(15189..15560)
DNA (372bp) protein (124aa)
50S ribosomal protein L7Ae n=4 Tax=Methanobrevibacter RepID=RL7A_METS3
rpl7ae; 50S ribosomal protein L7Ae
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L3_105_000M1_scaffold_827_29
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

16126..16650
DNA (525bp) protein (175aa)
Predicted DNA-binding protein n=4 Tax=Methanobrevibacter RepID=A5UJN4_METS3
DNA-binding protein
Predicted DNA-binding protein {ECO:0000313|EMBL:CDF28744.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L3_105_000M1_scaffold_827_30
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

16664..16951
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Methanobrevibacter smithii RepID=B9ACU9_METSM
Uncharacterized protein {ECO:0000313|EMBL:EFC92537.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
DNA-binding protein
Displaying items 1-30 of 52 in total

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