ggKbase home page

L3_105_000M1_scaffold_943

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_943_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

135..1523
DNA (1389bp) protein (463aa)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=A8RVX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP15489.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Site-specific recombinase XerD
L3_105_000M1_scaffold_943_2
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2301..4133
DNA (1833bp) protein (611aa)
GTP-binding protein TypA n=2 Tax=root RepID=R6GPB7_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:CDB26270.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
typA; GTP-binding protein TypA
L3_105_000M1_scaffold_943_3
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

comp(4201..5115)
DNA (915bp) protein (305aa)
Putative endolysin n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D8C8_9FIRM
Putative endolysin {ECO:0000313|EMBL:CCX72116.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L3_105_000M1_scaffold_943_4
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(5121..5951)
DNA (831bp) protein (277aa)
rrmA; ribosomal RNA large subunit methyltransferase A (EC:2.1.1.51)
Ribosomal RNA large subunit methyltransferase A n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D914_9FIRM
Ribosomal RNA large subunit methyltransferase A {ECO:0000313|EMBL:CDA81484.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_105_000M1_scaffold_943_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5948..7342)
DNA (1395bp) protein (465aa)
MatE efflux family protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1X0_9FIRM
MatE efflux family protein {ECO:0000313|EMBL:CDB27451.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
MatE efflux family protein
L3_105_000M1_scaffold_943_6
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(7356..8489)
DNA (1134bp) protein (378aa)
Cysteine desulfurase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DU74_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:CDA81482.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
iscS; cysteine desulfurase
L3_105_000M1_scaffold_943_7
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

8642..9922
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DBD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81481.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_943_8
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

9922..10494
DNA (573bp) protein (191aa)
5'-nucleotidase YfbR (EC:3.1.3.5)
5'-nucleotidase YfbR (Nucleoside 5'-monophosphatephosphohydrolase) (5'-deoxyribonucleotidase) n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D149_9FIRM
5'-nucleotidase YfbR (Nucleoside 5'-monophosphatephosphohydrolase) (5'-deoxyribonucleotidase) {ECO:0000313|EMBL:CDA81480.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_105_000M1_scaffold_943_9
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

10522..10791
DNA (270bp) protein (90aa)
UPF0237 protein BN516_01451 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D909_9FIRM
UPF0237 protein BN516_01451 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
ACT domain-containing protein
L3_105_000M1_scaffold_943_10
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

10809..12167
DNA (1359bp) protein (453aa)
UPF0210 protein BN556_00112 n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I3I3_9FIRM
UPF0210 protein BN556_00112 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
hypothetical protein
L3_105_000M1_scaffold_943_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

12167..12649
DNA (483bp) protein (161aa)
GNAT family acetyltransferase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DU68_9FIRM
GNAT family acetyltransferase {ECO:0000313|EMBL:CDA81477.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_943_12
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

12659..12886
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DBE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82264.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_943_13
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12948..13508)
DNA (561bp) protein (187aa)
Flavodoxin-like protein n=1 Tax=Ruminococcus albus 8 RepID=E9S7C1_RUMAL
Flavodoxin-like protein {ECO:0000313|EMBL:EGC04837.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
hypothetical protein
L3_105_000M1_scaffold_943_14
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(13523..14272)
DNA (750bp) protein (250aa)
4Fe-4S binding domain protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DCC1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCX73496.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_943_15
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(14519..22723)
DNA (8205bp) protein (2735aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EI14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92018.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
filamentous hemagglutinin outer membrane protein
L3_105_000M1_scaffold_943_16
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

22900..23673
DNA (774bp) protein (258aa)
Transcriptional regulator MerR family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AFS9_9FIRM
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCX39817.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Predicted transcriptional regulators
L3_105_000M1_scaffold_943_17
unknown

Not on your lists

comp(23595..23750)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_105_000M1_scaffold_943_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23890..26343)
DNA (2454bp) protein (818aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GP85_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:CDB27253.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
L3_105_000M1_scaffold_943_19
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(26386..26829)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CWX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81083.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_105_000M1_scaffold_943_20
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(26854..27303)
DNA (450bp) protein (150aa)
Transcriptional regulator CtsR n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D7W1_9FIRM
Transcriptional regulator CtsR {ECO:0000313|EMBL:CDA81084.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
ctsR; transcriptional regulator CtsR
L3_105_000M1_scaffold_943_21
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27629..27862
DNA (234bp) protein (78aa)
Putative site-specific recombinase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KVP7_OSCVS
putative site-specific recombinase
Putative site-specific recombinase {ECO:0000313|EMBL:BAL00680.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_105_000M1_scaffold_943_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28234..28548
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2W5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97350.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_105_000M1_scaffold_943_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28539..28712
DNA (174bp) protein (58aa)
DNA binding domain, excisionase family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2W4_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EDM97349.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_105_000M1_scaffold_943_24
Thermotoga sp. RQ7, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

28792..29784
DNA (993bp) protein (331aa)
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356, ECO:0000256|SAAS:SAAS00057170};; TaxID=126738 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. RQ7.;"
DNA polymerase III polC-type n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9KB69_THENN
L3_105_000M1_scaffold_943_25
unknown

Not on your lists

comp(29843..30241)
DNA (399bp) protein (133aa)

This feature has no annotations

L3_105_000M1_scaffold_943_26
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30234..30746)
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7V1M5_EEGSY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ56179.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
L3_105_000M1_scaffold_943_27
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30753..31835)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7V1M4_EEGSY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ56178.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
L3_105_000M1_scaffold_943_28
unknown

Not on your lists

comp(31837..32115)
DNA (279bp) protein (93aa)

This feature has no annotations

L3_105_000M1_scaffold_943_29
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32150..33082)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KVN3_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL00666.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_105_000M1_scaffold_943_30
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33206..33439
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JQD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36420.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
XRE family transcriptional regulator
Displaying items 1-30 of 46 in total

View Taxonomy