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L3_105_000M1_scaffold_388_28

Organism: L3_105_000M1_public_UNK

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 17
Location: comp(31266..34697)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 1143.0
  • Bit_score: 2229
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4U5_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 1143.0
  • Bit_score: 2229
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 40.1
  • Coverage: 1101.0
  • Bit_score: 795
  • Evalue 1.50e-227

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Taxonomy

Subdoligranulum sp. CAG:314 → Subdoligranulum → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3432
ATGCTGAACAGACTGAATAAATTGTCGCGGTATCCCGCGTATAAAGAAATCCTCGACTGTCTGCGGAGCGGAAAGCGCACCGCGGCTTTCGGAGTCTGCAAATATGAAAAATTTTTTGTCGCGGGAGGTCTTGACGGCTTTCCCGTATATGTCGCGCCCGATTTCGTATCCGCGCAGGAAGCCTTGCGCTGTCTCAACGATTTGACGGGGGGCGGCTTCGTTTACATTCCTTACAACGAGGACACTCTTCTGTTCAGGCAGGGAACGGGGCGGCTGCGTATGGAAATCAACTCCGCTCTCGACAAAATTCTGTCGGGCGCGAGGGGCGCGGTGCTTGCAGCCGACGCTCTTGCGGCGCGCTATCCCGATAGGAATGCGTTTGAGAGAGGACGTCGCACGCTGAAAAAGGGAGATACGGTGTCCGTTTCTTTTCTTGCGCGGTTTCTTTCGGAAAACGGTTTCAAACGCGTTTCCGCGGTGGAAAAAGCGGGAGAGTTTTCGATAAGAGGGGATATTGCGGATATATTTACGCCCGATTACGATTCTCCCGTGCGGCTTGATTTTTTCGACGATGAAATCGAAAGCATAAAGCTTGTCGACAAAGAGACGTTCAGGTCGGGCGAGGAGCTTGACGGCGTTTCTTTATATCCGTTGTTTTCCGTGCCTAGGGGCGAGGGGCAGAAGTCCGTCGCAAAGTCGCTTGTCGACTCCTCCGCGAAACAGAAGCTGTCCGCCGACGCGCGCGCAAGGCAGGGCGCGCTGCTTGACGAGATGCTGCCGTCGCTTGAAAACGGAACTGCGGACAACGGATGGCTTATGCCTTTTTTCCCTTGCTCCGACCTGTCGGAATTTCTGCCCCAAAACGCGGTCATGGTTTGGGACGAGCCGAAAATGCTTTCGGACAAACTCAACAGAACCTACGACGAGTTTTTTATGCGGATAGCCAATCTTTTGGCGGTCGGCGAAATTTTGCCCGAGCATACCGCGCAGCTTGTGCCGCGCGAAAAAGTTTTTGACAATTTTTTGTCTTTTTCACAGCTTGCGTTGATGAGTATTGCAAGTTCCGACACGTTTTTCAATCCGACTGCGGCTGTTTCTCTCAAATCCACGCCGCTGTTCAATTACAAATTCAACATACGTCAGCTCGGAGAGGATATAAAGCGGTGGAGGCTCAACGGCTACAAGGTCGGCGTTTTCTGCGACGACCTTGCGCGCGGTCAAAGGCTTGCCGAGGCGTTGGGCGAGGCGGACTGTCAGGTAACCGTTTCTTCAAAAGAGCCGGACGAGCTTGGCGAAAACACGGTTATAGCCGCGCGCCTTGCGAGAGGCTTTGTAAGCCACTCCAACAAAATCGCCCTTGTCGGCGGCGACGACGTATTTCCCAAGCCCGTCGGACAAAACGCCCGCAAACTTGCCAAAAAACGAGACAAGGTTTTTCTTTCGCTCGAAAAAGGCGACTACGCGGTTCACGAGGTGCACGGGATAGGTCTTTGCGACGGCGTTCACACTCTCACGGGCAGCTTCGGCACCAAGGATTTTATCAAGCTGCTTTTCCGCGACGGCGAAGCCGTTTACGTTCCGGTGGAAAATACGGATATGCTGAGCAAGTACGGCGGAGGGGAAAGCGCGCCTCGTTTGAGCCGTCTCGGCGGTGCGGAGTTTGAAAAGGTCAAGGCCAAAGTCAAAAGCAATCTTAAAGAAATGGCAATCGACCTTTTGAAGCTGTACGCGGCGCGCCGCAATTCGAGAGGCTTCGCATACAAAACAGACGAATATCTGGACGAGGAGTTTGCCGCCGCATTCCCTTTCACGGAAACGGACGACCAACTCAAATGTATAGAGGAAATAGACGCCGATTTGAAAAGCACGCGCATTATGGACCGTCTTTTGGTGGGCGACGTGGGCTTCGGCAAAACGGAAGTTGCCATGCGCGCCGCTTTCAAGGTGGTTTCAAACGGATTTCAGGCGGCTTTTCTCGCACCCACGACAATACTTGCCGAGCAGCACTACAACACCCTCAAACAGCGCATGGAGCATTTTGACGTAAAGGTGGCGTGTCTAAACCGTTTCAGAACCGCCGCCGAGCAGAAGAAAATTATAAAAGAGCTGTCGGAGGGGAAAATAGACATAGCGGTGGGCACCCACAGGCTTTTAAGCAAGGACGTCAGGTTTAAAAATCTCGGACTTTTGGTGCTTGACGAGGAGCAGCGCTTCGGAGTGGAGGACAAGGAAAAGCTTAAAGTCATTAAAACGGGCGTGGACGTGCTTACCATGTCGGCAACTCCTATTCCGCGCACGCTGCATATGGCTCTGACGGGCATGCGCGACATAAGCACGATTGCCACGCCGCCCAAGGAGCGCGTCGCGGTGGAGTCTTACGTCACGGCGCAGTCCGACGCGCTGATAAGGGATATAATACTGCGCGAATTCAACAGGCAGGGGCAGGTTTTTCTCGTTTACAACAGGGTGGAAACGATAGACTTGTTCGCCGCGCGACTCAAAAATTTAGTGCCCGAGGTCAAGATTGCCGTCGCTCACGGTCAGATGAACGAGGTGGCGCTGGAAAACAATATTTACAAATTTTCCCGAGGGCTTTTCGACGTTCTGGTATGCTCGACGATTATTGAAAACGGCATAGATATGCCCAACGCCAATACTTTGGTCGTTTGCGACGCGGACAGGCTGGGGCTGAGCCAACTCTATCAGCTGCGCGGCCGCGTCGGGCGCGGAAGCCGTCTCGCCTTTGCTTATTTTTTGTACAGGGACGGCAAAATACTTTCCGAAACGGCTTACAAGCGGCTGTGCGGCATTGCCGAATACAGCGAGCTTGGCAGCGGCTTCAAAATCGCCATGAAGGACCTTGAAATACGCGGCGCGGGAAACGTGCTCGGCAGAGAGCAGCACGGGCATATGCAGAAGGTGGGCTACGATATGTACGTAAAACTGCTCAACGAGGCGGTAGGCGAAATCGAGGGCAGACCGGTGCAAAAGACGCTCAACACTACGGTCGAGGCGGACGCGGACGCGTATGTTCCCGACGACTATATCGACAAGGACAACAGAATGACGCTTTATCAGCGGCTTGCCGAGCTTACGGGCAAGGAGGAGGCGGACAGGCTTGCGGACGAGCTGAGGGAAATTTACGGAGAGCCGCCGCAGGAGGTTAAAAATCTGCTGGAAATAGCGTTAATCAAGAGACTTGCCTCCAAAGCCGGCTTTGAACGCGTCAGGGTGGACAAAAAAGGCGCGGAGCTGGATTTTGCCGACAAAAAGTATCTTGACAACCCCGCGCTGTTTGCCGAAATGGAGCGCCGCAAAAACACGTGCAGGCTGGACGCAAGCAAAAAATTGTCCGTACAAATCGGCTTCGACGGCAAAAACGCGTCCGCAAATCTGCACAGTCTTGAAAATTTCTTGCTGGCTTTGAGCTGA
PROTEIN sequence
Length: 1144
MLNRLNKLSRYPAYKEILDCLRSGKRTAAFGVCKYEKFFVAGGLDGFPVYVAPDFVSAQEALRCLNDLTGGGFVYIPYNEDTLLFRQGTGRLRMEINSALDKILSGARGAVLAADALAARYPDRNAFERGRRTLKKGDTVSVSFLARFLSENGFKRVSAVEKAGEFSIRGDIADIFTPDYDSPVRLDFFDDEIESIKLVDKETFRSGEELDGVSLYPLFSVPRGEGQKSVAKSLVDSSAKQKLSADARARQGALLDEMLPSLENGTADNGWLMPFFPCSDLSEFLPQNAVMVWDEPKMLSDKLNRTYDEFFMRIANLLAVGEILPEHTAQLVPREKVFDNFLSFSQLALMSIASSDTFFNPTAAVSLKSTPLFNYKFNIRQLGEDIKRWRLNGYKVGVFCDDLARGQRLAEALGEADCQVTVSSKEPDELGENTVIAARLARGFVSHSNKIALVGGDDVFPKPVGQNARKLAKKRDKVFLSLEKGDYAVHEVHGIGLCDGVHTLTGSFGTKDFIKLLFRDGEAVYVPVENTDMLSKYGGGESAPRLSRLGGAEFEKVKAKVKSNLKEMAIDLLKLYAARRNSRGFAYKTDEYLDEEFAAAFPFTETDDQLKCIEEIDADLKSTRIMDRLLVGDVGFGKTEVAMRAAFKVVSNGFQAAFLAPTTILAEQHYNTLKQRMEHFDVKVACLNRFRTAAEQKKIIKELSEGKIDIAVGTHRLLSKDVRFKNLGLLVLDEEQRFGVEDKEKLKVIKTGVDVLTMSATPIPRTLHMALTGMRDISTIATPPKERVAVESYVTAQSDALIRDIILREFNRQGQVFLVYNRVETIDLFAARLKNLVPEVKIAVAHGQMNEVALENNIYKFSRGLFDVLVCSTIIENGIDMPNANTLVVCDADRLGLSQLYQLRGRVGRGSRLAFAYFLYRDGKILSETAYKRLCGIAEYSELGSGFKIAMKDLEIRGAGNVLGREQHGHMQKVGYDMYVKLLNEAVGEIEGRPVQKTLNTTVEADADAYVPDDYIDKDNRMTLYQRLAELTGKEEADRLADELREIYGEPPQEVKNLLEIALIKRLASKAGFERVRVDKKGAELDFADKKYLDNPALFAEMERRKNTCRLDASKKLSVQIGFDGKNASANLHSLENFLLALS*