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L3_105_000M1_scaffold_388

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_388_1
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1339
DNA (1338bp) protein (446aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Glycine--tRNA ligase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K625_9FIRM
glycyl-tRNA synthetase
L3_105_000M1_scaffold_388_2
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1363..2595
DNA (1233bp) protein (411aa)
Peptidase M29 aminopeptidase II n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K8B8_9FIRM
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:CDE71252.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
peptidase M29 aminopeptidase II
L3_105_000M1_scaffold_388_3
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2650..3603)
DNA (954bp) protein (318aa)
DNA polymerase III epsilon subunit n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5V9_9FIRM
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:CDE71251.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_4
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3652..5178)
DNA (1527bp) protein (509aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4P4_9FIRM
GMP synthase large subunit
L3_105_000M1_scaffold_388_5
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5189..6646)
DNA (1458bp) protein (486aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4X0_9FIRM
L3_105_000M1_scaffold_388_6
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6680..7642)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K621_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71248.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_7
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7779..8228)
DNA (450bp) protein (150aa)
sugar-phosphate isomerase, RpiB/LacA/LacB family (EC:5.3.1.6)
Sugar-phosphate isomerase RpiB/LacA/LacB family n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K8B4_9FIRM
Sugar-phosphate isomerase RpiB/LacA/LacB family {ECO:0000313|EMBL:CDE71247.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_8
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8254..9258)
DNA (1005bp) protein (335aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Putative RNA-binding protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5V4_9FIRM
sua5 superfamily-like protein
L3_105_000M1_scaffold_388_9
Scardovia wiggsiae, Scardovia, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9554..11362)
DNA (1809bp) protein (603aa)
Uncharacterized protein n=1 Tax=Scardovia wiggsiae F0424 RepID=J0WZH5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EJD64969.1}; TaxID=857290 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Scardovia.;" source="Scardovia wiggsiae F0424.;"
hypothetical protein
L3_105_000M1_scaffold_388_10
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11391..12344)
DNA (954bp) protein (318aa)
HaeIII restriction endonuclease n=1 Tax=Clostridium sp. CAG:349 RepID=R6WMP0_9CLOT
HaeIII restriction endonuclease {ECO:0000313|EMBL:CDD10695.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
restriction endonuclease HaeIII
L3_105_000M1_scaffold_388_11
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12354..13346)
DNA (993bp) protein (331aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
Cytosine-specific methyltransferase n=1 Tax=Clostridium sp. CAG:349 RepID=R6WUU4_9CLOT
prophage PRU01 DNA methylase, C-5 cytosine-specific family
L3_105_000M1_scaffold_388_12
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13346..13546)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K6P9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71965.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
XRE family transcriptional regulator
L3_105_000M1_scaffold_388_13
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14451..14822)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71245.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_14
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15627..15752
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K618_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71243.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_15
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16656..17603
DNA (948bp) protein (316aa)
Iron-sulfur cluster-binding protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K8B0_9FIRM
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:CDE71242.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
iron-sulfur cluster-binding protein
L3_105_000M1_scaffold_388_16
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17730..18374
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5V0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71241.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
membrane protein
L3_105_000M1_scaffold_388_17
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18830..19279)
DNA (450bp) protein (150aa)
SsrA-binding protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4N3_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
SsrA-binding protein
L3_105_000M1_scaffold_388_18
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19343..19633)
DNA (291bp) protein (97aa)
Preprotein translocase subunit SecG n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4V9_9FIRM
Preprotein translocase subunit SecG {ECO:0000313|EMBL:CDE71239.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_19
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19719..21260)
DNA (1542bp) protein (514aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K606_9FIRM
L3_105_000M1_scaffold_388_20
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21257..21994)
DNA (738bp) protein (246aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K8A2_9FIRM
L3_105_000M1_scaffold_388_21
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22030..23211)
DNA (1182bp) protein (394aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5U6_9FIRM
L3_105_000M1_scaffold_388_22
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23216..24850)
DNA (1635bp) protein (545aa)
Na/Pi-cotransporter family protein/PhoU family protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4M8_9FIRM
Na/Pi-cotransporter family protein/PhoU family protein {ECO:0000313|EMBL:CDE71235.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Na/Pi-cotransporter II-like protein
L3_105_000M1_scaffold_388_23
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25018..25962)
DNA (945bp) protein (315aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
tRNA-dihydrouridine synthase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4V5_9FIRM
tRNA-dihydrouridine synthase
L3_105_000M1_scaffold_388_24
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25955..26911)
DNA (957bp) protein (319aa)
MazG family protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K603_9FIRM
MazG family protein {ECO:0000313|EMBL:CDE71233.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
MazG family protein
L3_105_000M1_scaffold_388_25
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26901..28550)
DNA (1650bp) protein (550aa)
Putative stage V sporulation protein B n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K898_9FIRM
Putative stage V sporulation protein B {ECO:0000313|EMBL:CDE71232.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Polysaccharide biosynthesis protein
L3_105_000M1_scaffold_388_26
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28733..29227)
DNA (495bp) protein (165aa)
Stage V sporulation protein T n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5T7_9FIRM
Stage V sporulation protein T {ECO:0000313|EMBL:CDE71231.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
transcriptional regulator, AbrB family
L3_105_000M1_scaffold_388_27
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29349..31157)
DNA (1809bp) protein (603aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4L8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71230.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_105_000M1_scaffold_388_28
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31266..34697)
DNA (3432bp) protein (1144aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Transcription-repair-coupling factor n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4U5_9FIRM
mfd; transcription-repair coupling factor
L3_105_000M1_scaffold_388_29
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34678..35292)
DNA (615bp) protein (205aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Peptidyl-tRNA hydrolase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5Z2_9FIRM
hypothetical protein
L3_105_000M1_scaffold_388_30
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35465..36235
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K888_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71227.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
4Fe-4S binding protein
Displaying items 1-30 of 61 in total

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