ggKbase home page

L3_105_000M1_scaffold_2610

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2610_1
unknown

Not on your lists

3..92
DNA (90bp) protein (30aa)

This feature has no annotations

L3_105_000M1_scaffold_2610_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(468..1388)
DNA (921bp) protein (307aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Dihydroorotate dehydrogenase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA8_9FIRM
L3_105_000M1_scaffold_2610_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1385..2158)
DNA (774bp) protein (258aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKK4_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_105_000M1_scaffold_2610_4
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2247..2861)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SSN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49617.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_2610_5
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2874..6080)
DNA (3207bp) protein (1069aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=4 Tax=root RepID=B0MKK2_9FIRM
L3_105_000M1_scaffold_2610_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6071..7189)
DNA (1119bp) protein (373aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Carbamoyl-phosphate synthase small chain n=4 Tax=root RepID=D4JVB1_9FIRM
L3_105_000M1_scaffold_2610_7
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7233..8159)
DNA (927bp) protein (309aa)
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Orotidine 5'-phosphate decarboxylase n=5 Tax=root RepID=D4JVB2_9FIRM
L3_105_000M1_scaffold_2610_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8208..9485)
DNA (1278bp) protein (426aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RPM0_9FIRM
L3_105_000M1_scaffold_2610_9

Not on your lists

comp(9695..9853)
DNA (159bp) protein (53aa)
FeoA domain protein n=4 Tax=root RepID=B0MKJ8_9FIRM
Iron dependent repressor {ECO:0000313|EMBL:EKC73123.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_105_000M1_scaffold_2610_10
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9998..10627)
DNA (630bp) protein (210aa)
ADP-ribose pyrophosphatase n=4 Tax=Eubacterium RepID=D4JVB4_9FIRM
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CDC49608.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_2610_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10620..10826)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHZ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33381.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_2610_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10836..11387)
DNA (552bp) protein (184aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKJ5_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EDS01777.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_2610_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11412..12338)
DNA (927bp) protein (309aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MKJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01776.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_105_000M1_scaffold_2610_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12673..13608)
DNA (936bp) protein (312aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, C-terminal subunit {ECO:0000313|EMBL:CBK97037.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CBK97037.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Transketolase, C-terminal subunit n=2 Tax=Eubacterium RepID=D4JVB8_9FIRM
L3_105_000M1_scaffold_2610_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13630..14472)
DNA (843bp) protein (281aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase N-terminal subunit n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S2R7_9FIRM
Transketolase N-terminal subunit {ECO:0000313|EMBL:CDC49601.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_2610_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14699..15139)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MI03_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33386.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Displaying 16 items

View Taxonomy