ggKbase home page

L3_105_000M1_scaffold_1202

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1202_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

267..1058
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM20_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34803.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1202_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1035..2174)
DNA (1140bp) protein (380aa)
Na+/H+ antiporter NhaD and related arsenite permeases n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JTH3_9FIRM
Na+/H+ antiporter NhaD and related arsenite permeases
Na+/H+ antiporter NhaD and related arsenite permeases {ECO:0000313|EMBL:CBK96392.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1202_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2220..3611)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=2 Tax=root RepID=B0ML85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01491.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Putative virion core protein (lumpy skin disease virus)
L3_105_000M1_scaffold_1202_4
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3644..4408)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RG26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44279.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_1202_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4410..5372)
DNA (963bp) protein (321aa)
Tim44-like domain n=2 Tax=root RepID=D4JTH1_9FIRM
Tim44-like domain.
Tim44-like domain {ECO:0000313|EMBL:CBK96390.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1202_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5570..6133)
DNA (564bp) protein (188aa)
Transcriptional regulator n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM24_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL34807.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1202_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6363..6962
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0ML89_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDS01495.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_1202_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6955..9045
DNA (2091bp) protein (697aa)
Putative phage tail component domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0ML90_9FIRM
Putative phage tail component domain protein {ECO:0000313|EMBL:EDS01496.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted exporters of the RND superfamily
L3_105_000M1_scaffold_1202_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9060..11654
DNA (2595bp) protein (865aa)
X-X-X-Leu-X-X-Gly heptad repeats n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM27_9FIRM
X-X-X-Leu-X-X-Gly heptad repeats {ECO:0000313|EMBL:CBL34810.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
X-X-X-Leu-X-X-Gly heptad repeats
L3_105_000M1_scaffold_1202_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11818..12762
DNA (945bp) protein (315aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0ML92_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS01498.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type multidrug transport system, ATPase component
L3_105_000M1_scaffold_1202_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12774..13868
DNA (1095bp) protein (365aa)
ABC-2 type transporter n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0ML93_9FIRM
ABC-2 type transporter {ECO:0000313|EMBL:EDS01499.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-2 type transporter.
L3_105_000M1_scaffold_1202_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13883..15019
DNA (1137bp) protein (379aa)
ABC-2 type transporter n=2 Tax=root RepID=R6RMJ1_9FIRM
ABC-2 type transporter {ECO:0000313|EMBL:CDC44271.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ABC-type multidrug transport system, permease component
L3_105_000M1_scaffold_1202_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15035..16156
DNA (1122bp) protein (374aa)
Histidine kinase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RG16_9FIRM
Histidine kinase {ECO:0000313|EMBL:CDC44269.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
histidine kinase dimerization and phosphoacceptor region
L3_105_000M1_scaffold_1202_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16153..16776
DNA (624bp) protein (208aa)
Response regulator receiver domain protein n=2 Tax=Eubacterium RepID=B0ML96_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC44267.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L3_105_000M1_scaffold_1202_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16821..18386)
DNA (1566bp) protein (522aa)
HAD hydrolase family IIB n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RHA9_9FIRM
HAD hydrolase family IIB {ECO:0000313|EMBL:CDC47160.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
HAD-superfamily hydrolase, subfamily IIB
L3_105_000M1_scaffold_1202_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18980..20014
DNA (1035bp) protein (345aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JTG3_9FIRM
L3_105_000M1_scaffold_1202_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20160..20993
DNA (834bp) protein (278aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0ML77_9FIRM
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type {ECO:0000313|EMBL:EDS01506.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_1202_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21138..21350)
DNA (213bp) protein (71aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=B0ML79_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96379.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1202_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21453..22337)
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM36_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34819.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1202_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22552..22839
DNA (288bp) protein (96aa)
YabP family n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RH91_9FIRM
YabP family {ECO:0000313|EMBL:CDC47140.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
YabP family.
L3_105_000M1_scaffold_1202_21
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22836..24029
DNA (1194bp) protein (398aa)
Putative stage IV sporulation protein YqfD n=2 Tax=root RepID=R6RE33_9FIRM
Putative stage IV sporulation protein YqfD {ECO:0000313|EMBL:CDC47138.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Putative stage IV sporulation protein YqfD.
L3_105_000M1_scaffold_1202_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24137..25099
DNA (963bp) protein (321aa)
KH domain protein n=2 Tax=Eubacterium RepID=B0ML99_9FIRM
KH domain protein {ECO:0000313|EMBL:CDC47136.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_105_000M1_scaffold_1202_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25125..25619
DNA (495bp) protein (165aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Endoribonuclease YbeY n=2 Tax=Eubacterium siraeum RepID=D4JTF5_9FIRM
conserved hypothetical protein TIGR00043
L3_105_000M1_scaffold_1202_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25707..26114
DNA (408bp) protein (136aa)
Prokaryotic diacylglycerol kinase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLA1_9FIRM
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:EDS01515.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
diacylglycerol kinase
L3_105_000M1_scaffold_1202_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26107..27015
DNA (909bp) protein (303aa)
GTPase Era n=3 Tax=Eubacterium siraeum RepID=D4JTF4_9FIRM
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_1202_26
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27043..27807
DNA (765bp) protein (255aa)
DNA repair protein RecO n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RVS6_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
DNA repair protein RecO
L3_105_000M1_scaffold_1202_27
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27825..30206
DNA (2382bp) protein (794aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Endonuclease MutS2 n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RP68_9FIRM
MutS2 family protein
L3_105_000M1_scaffold_1202_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30225..30923
DNA (699bp) protein (233aa)
Predicted phosphatases n=2 Tax=Eubacterium siraeum RepID=D4MM44_9FIRM
Predicted phosphatases
Predicted phosphatases {ECO:0000313|EMBL:CBL34827.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1202_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30961..32085)
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM45_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34828.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1202_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32104..33264)
DNA (1161bp) protein (387aa)
Cellobiose 2-epimerase {ECO:0000256|HAMAP-Rule:MF_00929}; Short=CE {ECO:0000256|HAMAP-Rule:MF_00929};; EC=5.1.3.11 {ECO:0000256|HAMAP-Rule:MF_00929};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Cellobiose 2-epimerase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM46_9FIRM
N-acyl-D-glucosamine 2-epimerase
Displaying items 1-30 of 44 in total

View Taxonomy