ggKbase home page

L3_105_000M1_scaffold_1511

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1511_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUZ4_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBK96913.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1511_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(116..448)
DNA (333bp) protein (111aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUZ3_9FIRM
NTP pyrophosphohydrolases including oxidative damage repair enzymes
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:CBK96912.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1511_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(696..1097)
DNA (402bp) protein (134aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMW4_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL35097.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1511_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1139..1981)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUK8_9FIRM
conserved hypothetical protein TIGR02452
Uncharacterized protein {ECO:0000313|EMBL:CBK96777.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1511_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2005..2541)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMW2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL35095.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1511_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2749..4020)
DNA (1272bp) protein (424aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CBL35094.1}; EC=4.1.1.20 {ECO:0000313|EMBL:CBL35094.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Diaminopimelate decarboxylase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMW1_9FIRM
L3_105_000M1_scaffold_1511_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4084..4893)
DNA (810bp) protein (270aa)
Esterase/lipase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMW0_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL35093.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1511_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5559..7493)
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RUV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46806.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_1511_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7984..9708
DNA (1725bp) protein (575aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMV9_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL35092.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_000M1_scaffold_1511_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9709..11475
DNA (1767bp) protein (589aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMV8_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDR99682.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_000M1_scaffold_1511_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11420..12673
DNA (1254bp) protein (418aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579, ECO:0000313|EMBL:CBL35090.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Beta-glucosidase-related glycosidases n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMV7_9FIRM
L3_105_000M1_scaffold_1511_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12911..14764
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SDP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44732.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_105_000M1_scaffold_1511_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15254..15601
DNA (348bp) protein (116aa)
Predicted transcriptional regulators n=4 Tax=Eubacterium RepID=D4JUK1_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDR99686.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted transcriptional regulators
L3_105_000M1_scaffold_1511_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15686..16498
DNA (813bp) protein (271aa)
Predicted metal-dependent hydrolase of the TIM-barrel fold n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMV4_9FIRM
Predicted metal-dependent hydrolase of the TIM-barrel fold
Predicted metal-dependent hydrolase of the TIM-barrel fold {ECO:0000313|EMBL:CBL35087.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1511_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16498..17142
DNA (645bp) protein (215aa)
4'-phosphopantetheinyl transferase family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MSC0_9FIRM
4'-phosphopantetheinyl transferase family protein {ECO:0000313|EMBL:EDR99688.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Phosphopantetheinyl transferase
L3_105_000M1_scaffold_1511_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17257..17943
DNA (687bp) protein (229aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Thiamine-phosphate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUJ8_9FIRM
L3_105_000M1_scaffold_1511_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17960..18760
DNA (801bp) protein (267aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Eubacterium RepID=D4JUJ7_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDC44716.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_1511_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18762..19538
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MSC3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDR99691.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_105_000M1_scaffold_1511_19
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19535..20278
DNA (744bp) protein (248aa)
ABC transporter, permease protein n=4 Tax=root RepID=B0MSC4_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDC44713.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_105_000M1_scaffold_1511_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20280..21326
DNA (1047bp) protein (349aa)
NMT1/THI5-like protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RNQ6_9FIRM
NMT1/THI5-like protein {ECO:0000313|EMBL:CDC44711.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_105_000M1_scaffold_1511_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21545..23872
DNA (2328bp) protein (776aa)
Fibronectin type III domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MSC7_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:EDR99695.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Bacterial Ig-like domain (group 2)./Fibronectin type III domain.
L3_105_000M1_scaffold_1511_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23957..24367)
DNA (411bp) protein (137aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Peptide deformylase n=2 Tax=Eubacterium siraeum RepID=D4MMU6_9FIRM
N-formylmethionyl-tRNA deformylase
Displaying 22 items

View Taxonomy