ggKbase home page

L3_105_000M1_scaffold_1675

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1675_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(167..1204)
DNA (1038bp) protein (346aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Ketol-acid reductoisomerase n=5 Tax=root RepID=D4MJV5_9FIRM
L3_105_000M1_scaffold_1675_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1266..1757)
DNA (492bp) protein (164aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:CBL34039.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CBL34039.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Acetolactate synthase, small subunit n=5 Tax=root RepID=D4JRK2_9FIRM
L3_105_000M1_scaffold_1675_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1769..3400)
DNA (1632bp) protein (544aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
acetolactate synthase, large subunit (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ96_9FIRM
L3_105_000M1_scaffold_1675_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3732..4595
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJV8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34041.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4616..6079
DNA (1464bp) protein (488aa)
Uncharacterized protein n=2 Tax=root RepID=B0MQ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00072.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_105_000M1_scaffold_1675_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6251..6724)
DNA (474bp) protein (158aa)
Flavodoxins n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJW1_9FIRM
Flavodoxins
Flavodoxins {ECO:0000313|EMBL:CBL34044.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6726..7052)
DNA (327bp) protein (109aa)
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit n=2 Tax=Eubacterium siraeum RepID=D4JRK8_9FIRM
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit {ECO:0000313|EMBL:CBK95727.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1675_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7077..7508)
DNA (432bp) protein (144aa)
Uncharacterized conserved protein, contains double-stranded beta-helix domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJW3_9FIRM
Uncharacterized conserved protein, contains double-stranded beta-helix domain
Uncharacterized conserved protein, contains double-stranded beta-helix domain {ECO:0000313|EMBL:CBL34046.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7744..9042
DNA (1299bp) protein (433aa)
Electron transport complex, RnfABCDGE type, C subunit n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJW4_9FIRM
electron transport complex, RnfABCDGE type, C subunit
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9054..10001
DNA (948bp) protein (316aa)
Electron transport complex, RnfABCDGE type, D subunit n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRL1_9FIRM
electron transport complex, RnfABCDGE type, D subunit
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1675_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9998..10585
DNA (588bp) protein (196aa)
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJW6_9FIRM
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG {ECO:0000313|EMBL:CBL34049.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10578..11255
DNA (678bp) protein (226aa)
Electron transport complex, RnfABCDGE type, E subunit n=2 Tax=Eubacterium siraeum RepID=D4MJW7_9FIRM
electron transport complex, RnfABCDGE type, E subunit
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11255..11857
DNA (603bp) protein (201aa)
Electron transport complex, RnfABCDGE type, A subunit n=4 Tax=Eubacterium RepID=D4JRL4_9FIRM
electron transport complex, RnfABCDGE type, A subunit
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1675_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11873..12700
DNA (828bp) protein (276aa)
Electron transport complex, RnfABCDGE type, B subunit n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ86_9FIRM
electron transport complex, RnfABCDGE type, B subunit
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:EDS00065.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_1675_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12740..13327
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RS83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45941.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_105_000M1_scaffold_1675_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13342..14082
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RAK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45943.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_105_000M1_scaffold_1675_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14089..15267
DNA (1179bp) protein (393aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJX0_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL34053.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1675_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16009..17034)
DNA (1026bp) protein (342aa)
Endoglucanase (EC:3.2.1.4)
Endoglucanase {ECO:0000313|EMBL:CBL34054.1}; EC=3.2.1.4 {ECO:0000313|EMBL:CBL34054.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Endoglucanase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJX1_9FIRM
L3_105_000M1_scaffold_1675_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17167..18735)
DNA (1569bp) protein (523aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJX2_9FIRM
L3_105_000M1_scaffold_1675_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18916..20145
DNA (1230bp) protein (410aa)
Leucyl aminopeptidase (aminopeptidase T) (EC:3.4.11.-)
Leucyl aminopeptidase (Aminopeptidase T) {ECO:0000313|EMBL:CBL34056.1}; EC=3.4.11.- {ECO:0000313|EMBL:CBL34056.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Leucyl aminopeptidase (Aminopeptidase T) n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJX3_9FIRM
L3_105_000M1_scaffold_1675_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20283..21005
DNA (723bp) protein (241aa)
LytTr DNA-binding domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ79_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EDS00058.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Response regulator of the LytR/AlgR family
L3_105_000M1_scaffold_1675_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21036..21911)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00057.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Lysophospholipase
L3_105_000M1_scaffold_1675_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21969..22682)
DNA (714bp) protein (238aa)
Methyl-accepting chemotaxis protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJX6_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL34059.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Displaying 23 items

View Taxonomy