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L3_105_000M1_scaffold_1864

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1864_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(217..2226)
DNA (2010bp) protein (670aa)
Predicted permease n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJR1_9FIRM
Predicted permease {ECO:0000313|EMBL:CBL33994.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Predicted permease.
L3_105_000M1_scaffold_1864_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2223..2987)
DNA (765bp) protein (255aa)
ABC-type antimicrobial peptide transport system, ATPase component n=3 Tax=root RepID=D4JR59_9FIRM
ABC-type antimicrobial peptide transport system, ATPase component
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:CBK95578.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1864_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3096..4094)
DNA (999bp) protein (333aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=root RepID=B0MQH2_9FIRM
Signal transduction histidine kinase
L3_105_000M1_scaffold_1864_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4091..4762)
DNA (672bp) protein (224aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=root RepID=D4MJR4_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL33997.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1864_5
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4765..5493)
DNA (729bp) protein (243aa)
Hydrolase alpha/beta domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RU69_9FIRM
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDC48904.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
L3_105_000M1_scaffold_1864_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5597..7969)
DNA (2373bp) protein (791aa)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=2 Tax=root RepID=B0MQG9_9FIRM
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EDS00148.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
homocysteine S-methyltransferase
L3_105_000M1_scaffold_1864_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7959..8630)
DNA (672bp) protein (224aa)
Vitamin B12 dependent methionine synthase, activation domain. (EC:2.1.1.13)
Vitamin B12 dependent methionine synthase, activation domain {ECO:0000313|EMBL:CBK95583.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CBK95583.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Vitamin B12 dependent methionine synthase, activation domain n=3 Tax=Eubacterium RepID=D4JR64_9FIRM
L3_105_000M1_scaffold_1864_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8627..9487)
DNA (861bp) protein (287aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQG7_9FIRM
L3_105_000M1_scaffold_1864_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9529..11457)
DNA (1929bp) protein (643aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJR7_9FIRM
L3_105_000M1_scaffold_1864_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11942..13027
DNA (1086bp) protein (362aa)
Transcriptional regulator, CdaR family n=3 Tax=Eubacterium siraeum RepID=D4JR67_9FIRM
transcriptional regulator, CdaR family
Transcriptional regulator, CdaR family {ECO:0000313|EMBL:CBK95586.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1864_11
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13898..14590
DNA (693bp) protein (231aa)
Cell division ATP-binding protein FtsE n=4 Tax=Eubacterium RepID=D4JR68_9FIRM
cell division ATP-binding protein FtsE
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:CDC48892.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_1864_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14583..15470
DNA (888bp) protein (296aa)
Cell division protein FtsX n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJS0_9FIRM
Cell division protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1864_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15488..16795
DNA (1308bp) protein (436aa)
Membrane-bound metallopeptidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JR70_9FIRM
Membrane-bound metallopeptidase
Membrane-bound metallopeptidase {ECO:0000313|EMBL:CBK95589.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_1864_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16846..18036
DNA (1191bp) protein (397aa)
Periplasmic protease n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJS2_9FIRM
Periplasmic protease
Periplasmic protease {ECO:0000313|EMBL:CBL34005.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1864_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18099..18569
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJS3_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000313|EMBL:CBL34006.1}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_1864_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18591..20102
DNA (1512bp) protein (504aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQF7_9FIRM
L3_105_000M1_scaffold_1864_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20442..20618
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRF4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95673.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying 17 items

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