ggKbase home page

L3_105_000M1_scaffold_849

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_849_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(193..1593)
DNA (1401bp) protein (467aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVW0_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK97229.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_849_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1621..3450)
DNA (1830bp) protein (610aa)
Predicted membrane protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVW1_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK97230.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_849_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3453..3974)
DNA (522bp) protein (174aa)
Predicted Zn peptidase n=2 Tax=Eubacterium RepID=D4MJI5_9FIRM
Predicted Zn peptidase
Predicted Zn peptidase {ECO:0000313|EMBL:CDC45212.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_849_4
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3984..4379)
DNA (396bp) protein (132aa)
Predicted transcriptional regulators n=2 Tax=Eubacterium RepID=D4MJI4_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CDC45208.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_849_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4391..4780)
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP n=4 Tax=Eubacterium RepID=B0MR16_9FIRM
Putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:CBL33916.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_849_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4939..6150
DNA (1212bp) protein (404aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R8F1_9FIRM
L3_105_000M1_scaffold_849_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6197..7441)
DNA (1245bp) protein (415aa)
Saccharopine dehydrogenase {ECO:0000313|EMBL:EDR99931.1}; EC=1.5.1.7 {ECO:0000313|EMBL:EDR99931.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Saccharopine dehydrogenase (NAD+, L-lysine forming) (EC:1.5.1.7)
Saccharopine dehydrogenase n=3 Tax=root RepID=B0MR14_9FIRM
L3_105_000M1_scaffold_849_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7496..9376)
DNA (1881bp) protein (627aa)
Glycosidases (EC:3.2.1.41)
Glycosidases {ECO:0000313|EMBL:CBL33914.1}; EC=3.2.1.41 {ECO:0000313|EMBL:CBL33914.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Glycosidases n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJI1_9FIRM
L3_105_000M1_scaffold_849_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9480..11879)
DNA (2400bp) protein (800aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CBL33913.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJI0_9FIRM
L3_105_000M1_scaffold_849_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12090..12755)
DNA (666bp) protein (222aa)
K+ transport systems, NAD-binding component n=2 Tax=Eubacterium siraeum RepID=D4MJH9_9FIRM
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBL33912.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_849_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12782..13402)
DNA (621bp) protein (207aa)
K+ transport systems, NAD-binding component n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJH8_9FIRM
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBL33911.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_849_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13402..14289)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99926.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
beta-lactamase domain protein
L3_105_000M1_scaffold_849_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14469..15389)
DNA (921bp) protein (307aa)
CheW-like protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR08_9FIRM
CheW-like protein {ECO:0000313|EMBL:EDR99925.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Chemotaxis signal transduction protein
L3_105_000M1_scaffold_849_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15764..16753)
DNA (990bp) protein (330aa)
Phosphoribulokinase/uridine kinase family protein n=2 Tax=Eubacterium RepID=B0MR07_9FIRM
Phosphoribulokinase/uridine kinase family protein {ECO:0000313|EMBL:CDC45174.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Uridine kinase
L3_105_000M1_scaffold_849_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16785..16973)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MR06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45173.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_105_000M1_scaffold_849_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17153..17917
DNA (765bp) protein (255aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Eubacterium RepID=B0MR05_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDR99922.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_105_000M1_scaffold_849_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17959..20895
DNA (2937bp) protein (979aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99921.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_105_000M1_scaffold_849_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21430..24060
DNA (2631bp) protein (877aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:CBL33904.1}; EC=2.7.9.1 {ECO:0000313|EMBL:CBL33904.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Pyruvate, phosphate dikinase n=2 Tax=Eubacterium siraeum RepID=D4MJH1_9FIRM
L3_105_000M1_scaffold_849_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24703..25809)
DNA (1107bp) protein (369aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase {ECO:0000313|EMBL:CBK97245.1}; EC=5.4.99.9 {ECO:0000313|EMBL:CBK97245.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
UDP-galactopyranose mutase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVX6_9FIRM
L3_105_000M1_scaffold_849_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25841..26335)
DNA (495bp) protein (165aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Shikimate kinase n=4 Tax=root RepID=D4JVX7_9FIRM
L3_105_000M1_scaffold_849_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26365..26859)
DNA (495bp) protein (165aa)
Intein C-terminal splicing region n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR00_9FIRM
Intein C-terminal splicing region {ECO:0000313|EMBL:EDR99917.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_105_000M1_scaffold_849_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26852..30379)
DNA (3528bp) protein (1176aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S192_9FIRM
L3_105_000M1_scaffold_849_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30414..31043)
DNA (630bp) protein (210aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Peptidyl-tRNA hydrolase n=2 Tax=Eubacterium siraeum RepID=D4MJG6_9FIRM
L3_105_000M1_scaffold_849_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31046..32554)
DNA (1509bp) protein (503aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL33898.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL33898.1};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
4-alpha-glucanotransferase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJG5_9FIRM
L3_105_000M1_scaffold_849_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32579..34105)
DNA (1527bp) protein (509aa)
Domain of unknown function (DUF303). (EC:3.1.1.53)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK97251.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_105_000M1_scaffold_849_26
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34098..35111)
DNA (1014bp) protein (338aa)
Exonuclease n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S187_9FIRM
Exonuclease {ECO:0000313|EMBL:CDC49076.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Exonuclease RNase T and DNA polymerase III
L3_105_000M1_scaffold_849_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35185..36012)
DNA (828bp) protein (276aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270, ECO:0000313|EMBL:CBL33896.1}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290, ECO:0000313|EMBL:CBL33896.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Thymidylate synthase n=2 Tax=Eubacterium siraeum RepID=D4MJG3_9FIRM
L3_105_000M1_scaffold_849_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36071..37285)
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJG2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33895.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_105_000M1_scaffold_849_29
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37573..38892)
DNA (1320bp) protein (440aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Aspartokinase n=6 Tax=root RepID=D4JVY5_9FIRM
Displaying 29 items

View Taxonomy