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L3_105_000M1_scaffold_1224

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1224_1
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..445)
DNA (444bp) protein (148aa)
Na/Pi-cotransporter n=1 Tax=Clostridium sp. CAG:138 RepID=R6BCX1_9CLOT
Na/Pi-cotransporter {ECO:0000313|EMBL:CDA51227.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Na/Pi-cotransporter II-like protein
L3_105_000M1_scaffold_1224_2
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(531..1070)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K8V4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE72690.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
nadR; transcriptional repressor of de novo NAD biosynthesis
L3_105_000M1_scaffold_1224_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1226..1780
DNA (555bp) protein (185aa)
Isochorismatase hydrolase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUT1_9FIRM
Isochorismatase hydrolase {ECO:0000313|EMBL:CDB41633.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
isochorismatase hydrolase
L3_105_000M1_scaffold_1224_4
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1992..3218
DNA (1227bp) protein (409aa)
Alpha-L-fucosidase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y463_9FIRM
Alpha-L-fucosidase {ECO:0000313|EMBL:EEF69241.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
alpha-L-fucosidase
L3_105_000M1_scaffold_1224_5
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3276..4592
DNA (1317bp) protein (439aa)
Putative Na(+)/H(+) antiporter n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ELC0_9FIRM
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:CDE03689.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
transporter, CPA2 family (2.A.37)
L3_105_000M1_scaffold_1224_6
unknown

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comp(4735..5241)
DNA (507bp) protein (169aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_7
unknown

Not on your lists

comp(5508..6020)
DNA (513bp) protein (171aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_8
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6206..7144)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q1W5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20339.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_105_000M1_scaffold_1224_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(7242..7748)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D1U2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74180.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1224_10
unknown

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comp(7851..8567)
DNA (717bp) protein (239aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_11
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8625..9404)
DNA (780bp) protein (260aa)
putative RNA methyltransferase (EC:2.1.1.-)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FTL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17848.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L3_105_000M1_scaffold_1224_12
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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9692..10561
DNA (870bp) protein (290aa)
Sigma-E processing peptidase SpoIIGA n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BCF3_9FIRM
Sigma-E processing peptidase SpoIIGA {ECO:0000313|EMBL:CDD63407.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
peptidase
L3_105_000M1_scaffold_1224_13
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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10698..11426
DNA (729bp) protein (243aa)
RNA polymerase sigma factor id=3938021 bin=GWF2_Clostridiales_38_85 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
protein SigE
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_1224_14
Listeria monocytogenes, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12084..12593)
DNA (510bp) protein (170aa)
DNA-binding protein n=1 Tax=Listeria monocytogenes SLCC7179 RepID=J7N9U9_LISMN
DNA-binding protein
Transcriptional regulator {ECO:0000313|EMBL:KJR59670.1}; TaxID=1639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria monocytogenes.;"
L3_105_000M1_scaffold_1224_15
unknown

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comp(12751..13002)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12999..13520)
DNA (522bp) protein (174aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EFB76907.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EFB76907.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribose-5-phosphate isomerase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK97_9FIRM
hypothetical protein
L3_105_000M1_scaffold_1224_17
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13624..14439)
DNA (816bp) protein (272aa)
Universal bacterial protein YeaZ n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L9A2_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EOS55354.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_105_000M1_scaffold_1224_18
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14571..14936)
DNA (366bp) protein (122aa)
Uncharacterized protein family UPF0079 ATPase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FQB5_9FIRM
Uncharacterized protein family UPF0079 ATPase {ECO:0000313|EMBL:CDE17504.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
putative hydrolase
L3_105_000M1_scaffold_1224_19
unknown

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14994..15425
DNA (432bp) protein (144aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_20
unknown

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15379..15558
DNA (180bp) protein (60aa)

This feature has no annotations

L3_105_000M1_scaffold_1224_21
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15561..16289
DNA (729bp) protein (243aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
ytzG; pseudouridine synthase YtzG (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIZ2_9FIRM
L3_105_000M1_scaffold_1224_22
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16475..18628
DNA (2154bp) protein (718aa)
Transcriptional accessory protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EKW4_9FIRM
Transcriptional accessory protein {ECO:0000313|EMBL:CDE02933.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
transcriptional accessory protein
L3_105_000M1_scaffold_1224_23
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

18826..19938
DNA (1113bp) protein (371aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U9N9_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC76801.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
ABC transporter-like protein
L3_105_000M1_scaffold_1224_24
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20167..22239
DNA (2073bp) protein (691aa)
Elongation factor G 2 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QHU6_9FIRM
Elongation factor G 2 {ECO:0000313|EMBL:CCZ20627.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
translation elongation factor G
L3_105_000M1_scaffold_1224_25
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22303..23037)
DNA (735bp) protein (245aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Clostridium sp. CAG:413 RepID=R6N8X5_9CLOT
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:CDC08483.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ugpQ1; Glycerophosphoryl diester phosphodiesterase
L3_105_000M1_scaffold_1224_26
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(23110..23703)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CWT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72365.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1224_27
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(23670..24158)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LQI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88160.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_105_000M1_scaffold_1224_28
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24269..24745)
DNA (477bp) protein (159aa)
mutX; mutator MutT protein (EC:3.6.1.-)
Mutator MutT protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TUI2_9FIRM
Mutator MutT protein {ECO:0000313|EMBL:CDC73484.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_105_000M1_scaffold_1224_29
Paenibacillus barengoltzii, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24846..26087)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9LAE8_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EOS55695.1}; TaxID=1235795 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus barengoltzii G22.;"
oxidoreductase domain-containing protein
L3_105_000M1_scaffold_1224_30
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26142..27011)
DNA (870bp) protein (290aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UDY5_RUMA7
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:ADU21772.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
Displaying items 1-30 of 33 in total

View Taxonomy