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L3_105_000M1_scaffold_1583

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1583_1
Bacillus thermoamylovorans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2..388
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Listeria monocytogenes RepID=G9G5L2_LISMN
Strain B4166 NODE_198, whole genome shotgun sequence {ECO:0000313|EMBL:KIO63318.1}; Strain B4167 NODE_165, whole genome shotgun sequence {ECO:0000313|EMBL:KIO72398.1}; TaxID=35841 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermoamylovorans.;"
putative transcriptional regulator
L3_105_000M1_scaffold_1583_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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454..903
DNA (450bp) protein (150aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YT54_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHM44325.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Predicted transcriptional regulators
L3_105_000M1_scaffold_1583_3
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1920..2708
DNA (789bp) protein (263aa)
Methyltransferase domain protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CS09_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:CDA79543.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_105_000M1_scaffold_1583_4
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2713..3717
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=B9E297_CLOK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDK33733.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
L3_105_000M1_scaffold_1583_5
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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3900..4433
DNA (534bp) protein (178aa)
Phosphorylase family n=1 Tax=Turicibacter sp. HGF1 RepID=F0HEJ9_9FIRM
Uridine phosphorylase {ECO:0000313|EMBL:CDC46061.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
phosphorylase, Pnp/Udp family protein
L3_105_000M1_scaffold_1583_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4474..5019
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BGY3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62450.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
GCN5-related N-acetyltransferase
L3_105_000M1_scaffold_1583_7
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5217..5801)
DNA (585bp) protein (195aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC:2.4.2.-)
Glutamine amidotransferase subunit PdxT n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L3T0_9FIRM
L3_105_000M1_scaffold_1583_8
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5805..6680)
DNA (876bp) protein (292aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-)
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N375_9FIRM
L3_105_000M1_scaffold_1583_9
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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6946..7746
DNA (801bp) protein (267aa)
Sortase, SrtB family n=2 Tax=Oscillibacter RepID=U2QJF8_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:ERK65518.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
sortase, SrtB family
L3_105_000M1_scaffold_1583_10
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7797..8312)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X4D7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY90758.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_105_000M1_scaffold_1583_11
unknown

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8581..9318
DNA (738bp) protein (246aa)

This feature has no annotations

L3_105_000M1_scaffold_1583_12
unknown

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9738..10085
DNA (348bp) protein (116aa)

This feature has no annotations

L3_105_000M1_scaffold_1583_13
unknown

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comp(10602..10799)
DNA (198bp) protein (66aa)

This feature has no annotations

L3_105_000M1_scaffold_1583_14
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12083..13243
DNA (1161bp) protein (387aa)
3D domain-containing protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DLY3_DESRL
hypothetical protein
3D domain-containing protein {ECO:0000313|EMBL:AEG58426.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
L3_105_000M1_scaffold_1583_15
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13810..14481
DNA (672bp) protein (224aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
deoxyribose-phosphate aldolase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003638605
L3_105_000M1_scaffold_1583_16
unknown

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14567..14671
DNA (105bp) protein (35aa)

This feature has no annotations

L3_105_000M1_scaffold_1583_17
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14773..15222
DNA (450bp) protein (150aa)
Cytidine deaminase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BSH2_9CLOT
Cytidine deaminase {ECO:0000313|EMBL:CDA62056.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
cytidine deaminase
L3_105_000M1_scaffold_1583_18
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15302..16411
DNA (1110bp) protein (370aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium sp. CAG:448 RepID=R6TNM3_9CLOT
L3_105_000M1_scaffold_1583_19
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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16458..17414
DNA (957bp) protein (319aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.8)
tRNA dimethylallyltransferase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M525_9FIRM
L3_105_000M1_scaffold_1583_20
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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17658..18926
DNA (1269bp) protein (423aa)
Uncharacterized protein id=4390709 bin=GWF2_Clostridiales_38_85 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_1583_21
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18929..19618
DNA (690bp) protein (230aa)
Pyridoxal phosphate enzyme YggS family n=1 Tax=Clostridium sp. CAG:242 RepID=R6D085_9CLOT
Pyridoxal phosphate enzyme YggS family {ECO:0000313|EMBL:CDA78614.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
alanine racemase
L3_105_000M1_scaffold_1583_22
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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19919..20398
DNA (480bp) protein (160aa)
Cell division protein SepF n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TWD4_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_105_000M1_scaffold_1583_23
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20550..20828
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SGH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC60268.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
putative membrane protein
L3_105_000M1_scaffold_1583_24
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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20981..21919
DNA (939bp) protein (313aa)
DivIVA domain n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UTT3_9FIRM
DivIVA domain {ECO:0000313|EMBL:CDC74117.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
DivIVA; cell division initiation protein
L3_105_000M1_scaffold_1583_25
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22130..22975
DNA (846bp) protein (282aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
Lipoprotein signal peptidase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FW91_9FIRM
lspA; lipoprotein signal peptidase
L3_105_000M1_scaffold_1583_26
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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22972..23835
DNA (864bp) protein (288aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
ylyB; putative RNA pseudouridine synthase YlyB (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BFB7_9FIRM
Displaying 26 items

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