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L3_105_000M1_scaffold_1596

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1596_1
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..486)
DNA (486bp) protein (162aa)
SCP-like protein n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2R9M5_9FIRM
SCP-like protein {ECO:0000313|EMBL:ERK47407.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
Uncharacterized protein with SCP/PR1 domains
L3_105_000M1_scaffold_1596_2
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(852..3740)
DNA (2889bp) protein (963aa)
UvrABC system protein A n=1 Tax=Clostridium sp. CAG:448 RepID=R6SST8_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
uvrA; UvrABC system protein A
L3_105_000M1_scaffold_1596_3
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(3783..5870)
DNA (2088bp) protein (696aa)
UvrABC system protein B n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6V1U1_9FIRM
uvrB; UvrABC system protein B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_105_000M1_scaffold_1596_4
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6417..7574
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L4F5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY68191.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
periplasmic binding protein/LacI transcriptional regulator
L3_105_000M1_scaffold_1596_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7637..9181
DNA (1545bp) protein (515aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RWS1_9CLOT
ABC transporter
L3_105_000M1_scaffold_1596_6
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9208..10290
DNA (1083bp) protein (361aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QHC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32399.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
L3_105_000M1_scaffold_1596_7
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10353..10736
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q6P5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32398.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
Pectin lyase
L3_105_000M1_scaffold_1596_8
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11073..12134
DNA (1062bp) protein (354aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V930_9FIRM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCZ84609.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
D-alanyl-D-alanine carboxypeptidase
L3_105_000M1_scaffold_1596_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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12127..13539
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4Y3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75243.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
MiaB-like tRNA modifying enzyme
L3_105_000M1_scaffold_1596_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13529..17290
DNA (3762bp) protein (1254aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:ABN51790.1}; EC=6.3.5.3 {ECO:0000313|EMBL:ABN51790.1};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium thermocellum JW20 RepID=D1NM62_CLOTM
L3_105_000M1_scaffold_1596_11
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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17366..18241
DNA (876bp) protein (292aa)
Predicted phosphohydrolases n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HJ53_9FIRM
Predicted phosphohydrolases {ECO:0000313|EMBL:CDB26022.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Predicted phosphohydrolases
L3_105_000M1_scaffold_1596_12
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18372..19811)
DNA (1440bp) protein (480aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:448 RepID=R6SXU4_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX
L3_105_000M1_scaffold_1596_13
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19843..20412)
DNA (570bp) protein (190aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DV49_CLOS4
L3_105_000M1_scaffold_1596_14
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20650..22122)
DNA (1473bp) protein (491aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
tig; Trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FT30_9FIRM
L3_105_000M1_scaffold_1596_15
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22360..23142)
DNA (783bp) protein (261aa)
Metallophosphoesterase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FUD7_9FIRM
Metallophosphoesterase {ECO:0000313|EMBL:CDE18465.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
Predicted phosphohydrolase
Displaying 15 items

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