ggKbase home page

L3_105_000M1_scaffold_1781

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1781_1
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(276..530)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TQN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC75758.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_105_000M1_scaffold_1781_2
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(679..954)
DNA (276bp) protein (92aa)
Putative integration host factor, beta subunit n=1 Tax=Selenomonas sp. CM52 RepID=J6I762_9FIRM
Putative integration host factor, beta subunit {ECO:0000313|EMBL:EJU28873.1}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
hup; DNA-binding protein HU
L3_105_000M1_scaffold_1781_3
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(1137..5714)
DNA (4578bp) protein (1526aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
polC; DNA polymerase III PolC-type (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TQR3_9FIRM
L3_105_000M1_scaffold_1781_4
unknown

Not on your lists

comp(5677..5901)
DNA (225bp) protein (75aa)

This feature has no annotations

L3_105_000M1_scaffold_1781_5
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5894..6997)
DNA (1104bp) protein (368aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YUN3_9FIRM
L3_105_000M1_scaffold_1781_6
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7012..8109)
DNA (1098bp) protein (366aa)
Membrane-associated zinc metalloprotease n=1 Tax=Clostridium sp. CAG:448 RepID=R6T1W5_9CLOT
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:CDC63744.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
RIP metalloprotease RseP
L3_105_000M1_scaffold_1781_7
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8303..9487)
DNA (1185bp) protein (395aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q432_9FIRM
hypothetical protein
L3_105_000M1_scaffold_1781_8
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9591..10409)
DNA (819bp) protein (273aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Phosphatidate cytidylyltransferase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PX15_9FIRM
phosphatidate cytidylyltransferase
L3_105_000M1_scaffold_1781_9
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10646..11422)
DNA (777bp) protein (259aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FVJ2_9FIRM
L3_105_000M1_scaffold_1781_10
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(11512..12066)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M0C1_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
ribosome recycling factor
L3_105_000M1_scaffold_1781_11
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12063..12770)
DNA (708bp) protein (236aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PXZ9_9FIRM
L3_105_000M1_scaffold_1781_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12969..14177)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ETI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE05751.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
capA; PGA biosynthesis protein CapA
L3_105_000M1_scaffold_1781_13
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(14429..15856)
DNA (1428bp) protein (476aa)
Stage IV sporulation protein A id=4236338 bin=GWF2_Clostridiales_38_85 species=Anaerotruncus colihominis genus=Anaerotruncus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_1781_14
unknown

Not on your lists

16097..16195
DNA (99bp) protein (33aa)

This feature has no annotations

L3_105_000M1_scaffold_1781_15
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16192..17226
DNA (1035bp) protein (345aa)
D-lactate dehydrogenase (EC:1.1.1.28)
D-lactate dehydrogenase n=1 Tax=Clostridium sp. CAG:448 RepID=R6T9M1_9CLOT
D-lactate dehydrogenase {ECO:0000313|EMBL:CDC64526.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_105_000M1_scaffold_1781_16
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

17344..18147
DNA (804bp) protein (268aa)
Zinc/iron permease n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EL94_9FIRM
Zinc/iron permease {ECO:0000313|EMBL:CCX93450.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
putative divalent heavy-metal cations transporter
L3_105_000M1_scaffold_1781_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18303..18866)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GJS4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94818.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
flavin reductase domain-containing FMN-binding protein
L3_105_000M1_scaffold_1781_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19019..19645)
DNA (627bp) protein (209aa)
Peptidase M50 family protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GJ90_9FIRM
Peptidase M50 family protein {ECO:0000313|EMBL:CDB25508.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_105_000M1_scaffold_1781_19
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(19605..20750)
DNA (1146bp) protein (382aa)
Sporulation integral membrane protein YtvI n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TT82_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDC76638.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_105_000M1_scaffold_1781_20
unknown

Not on your lists

21167..21616
DNA (450bp) protein (150aa)

This feature has no annotations

Displaying 20 items

View Taxonomy