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L3_105_000M1_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_354_1
unknown

Not on your lists

comp(9..491)
DNA (483bp) protein (161aa)

This feature has no annotations

L3_105_000M1_scaffold_354_2
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

560..1687
DNA (1128bp) protein (376aa)
Sporulation integral membrane protein YlbJ n=1 Tax=Clostridium sp. CAG:492 RepID=R5Z7V0_9CLOT
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CDA30196.1}; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
nucleoside recognition
L3_105_000M1_scaffold_354_3
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1516..3186)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FWT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18943.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
amino acid transporter
L3_105_000M1_scaffold_354_4
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3595..3879
DNA (285bp) protein (95aa)
10 kDa chaperonin n=4 Tax=Eubacterium RepID=C4ZD47_EUBR3
co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_105_000M1_scaffold_354_5
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3983..5614
DNA (1632bp) protein (544aa)
60 kDa chaperonin n=2 Tax=Bacteria RepID=R7FVR9_9FIRM
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
chaperonin GroL
L3_105_000M1_scaffold_354_6
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6269..6391)
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=Clostridiaceae RepID=R8VZE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERJ00822.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_105_000M1_scaffold_354_7
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6402..7049)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F136_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERJ00823.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_105_000M1_scaffold_354_8
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7042..7902)
DNA (861bp) protein (287aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DWE2_CLOS4
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERJ00824.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
ABC-type multidrug transport system, ATPase component
L3_105_000M1_scaffold_354_9
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7895..8278)
DNA (384bp) protein (128aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DDC2_CLOS4
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERJ00825.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
transcriptional regulator, GntR family
L3_105_000M1_scaffold_354_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8850..10679)
DNA (1830bp) protein (610aa)
Glycosyl hydrolase family 20, catalytic domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NUY2_9FIRM
Glycosyl hydrolase family 20 {ECO:0000313|EMBL:KJU72242.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
glycosyl hydrolase family 20, catalytic domain protein
L3_105_000M1_scaffold_354_11
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10960..11241)
DNA (282bp) protein (94aa)
50S ribosomal protein L27 n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FU08_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
rpmA; 50S ribosomal protein L27
L3_105_000M1_scaffold_354_12
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11390..11755)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QGH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20187.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_105_000M1_scaffold_354_13
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists


comp(11879..12190)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TSS5_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
ribosomal protein L21P
L3_105_000M1_scaffold_354_14
Fusobacterium sp. oral taxon 370, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

12813..13217
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. oral taxon 370 str. F0437 RepID=G6C620_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EHI76695.1}; TaxID=861452 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium sp. oral taxon 370 str. F0437.;"
L3_105_000M1_scaffold_354_15
unknown

Not on your lists

13269..13652
DNA (384bp) protein (128aa)

This feature has no annotations

L3_105_000M1_scaffold_354_16
unknown

Not on your lists

comp(13694..13897)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_105_000M1_scaffold_354_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13915..14769)
DNA (855bp) protein (285aa)
folD; Bifunctional protein FolD (EC:1.5.1.5)
Bifunctional protein FolD n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6V3_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_354_18
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14835..15884)
DNA (1050bp) protein (350aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ESG0_9FIRM
L3_105_000M1_scaffold_354_19
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(15961..17271)
DNA (1311bp) protein (437aa)
ymfH; putative zinc protease YmfH (EC:3.4.24.-)
Putative uncharacterized protein id=3088274 bin=GWF2_Clostridiales_36_10 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
L3_105_000M1_scaffold_354_20
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(17264..18574)
DNA (1311bp) protein (437aa)
Insulinase, peptidase family M16 id=3475719 bin=GWF2_Clostridiales_38_85 species=Ruminococcaceae bacterium D16 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
peptidase M16 domain-containing protein
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_354_21
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18763..19761)
DNA (999bp) protein (333aa)
endo-1,4-beta-glucanase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017449F7
endoglucanase
Endoglucanase {ECO:0000313|EMBL:AHF92328.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
L3_105_000M1_scaffold_354_22
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19998..20810)
DNA (813bp) protein (271aa)
Esterase/lipase-like protein n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XIM5_CALS8
Esterase/lipase-like protein
Esterase/lipase-like protein {ECO:0000313|EMBL:ABP66760.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
L3_105_000M1_scaffold_354_23
unknown

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comp(20844..21512)
DNA (669bp) protein (223aa)

This feature has no annotations

L3_105_000M1_scaffold_354_24
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21947..22267)
DNA (321bp) protein (107aa)
UPF0145 protein BN568_00146 n=1 Tax=Blautia sp. CAG:257 RepID=R5WWX3_9FIRM
UPF0145 protein BN568_00146 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L3_105_000M1_scaffold_354_25
unknown

Not on your lists

22751..23683
DNA (933bp) protein (311aa)

This feature has no annotations

L3_105_000M1_scaffold_354_26
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

23966..24220
DNA (255bp) protein (85aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TF09_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC70835.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_105_000M1_scaffold_354_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24487..25272
DNA (786bp) protein (262aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUM4_9FIRM
L3_105_000M1_scaffold_354_28
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25416..27020)
DNA (1605bp) protein (535aa)
Peptidoglycan-binding lysin domain n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QCY0_9FIRM
Peptidoglycan-binding lysin domain {ECO:0000313|EMBL:CCZ20096.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Peptidoglycan-binding lysin domain
L3_105_000M1_scaffold_354_29
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27616..28209)
DNA (594bp) protein (198aa)
Antioxidant AhpC/TSA family n=1 Tax=Clostridium sp. CAG:43 RepID=R7B642_9CLOT
Antioxidant AhpC/TSA family {ECO:0000313|EMBL:CDD59166.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
peroxiredoxin
L3_105_000M1_scaffold_354_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28222..28884)
DNA (663bp) protein (221aa)
Cytochrome C biogenesis protein transmembrane region n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIS8_9FIRM
Cytochrome C biogenesis protein transmembrane region {ECO:0000313|EMBL:EFB77437.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cytochrome c biogenesis protein
Displaying items 1-30 of 67 in total

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