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L3_105_000M1_scaffold_636

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_636_1
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..894)
DNA (894bp) protein (298aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
1,4-alpha-glucan-branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FT63_9FIRM
L3_105_000M1_scaffold_636_2
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

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1422..2495
DNA (1074bp) protein (358aa)
Oxidoreductase domain protein id=4109209 bin=GWF2_Lentisphaerae_49_21 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
oxidoreductase
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
L3_105_000M1_scaffold_636_3
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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2963..3388
DNA (426bp) protein (142aa)
50S ribosomal protein L13 n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6ULV3_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
LSU ribosomal protein L13P
L3_105_000M1_scaffold_636_4
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3409..3813
DNA (405bp) protein (135aa)
30S ribosomal protein S9 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QGG7_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
rpsI; 30S ribosomal protein S9
L3_105_000M1_scaffold_636_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3925..4806
DNA (882bp) protein (294aa)
Predicted metal-dependent phosphoesterases (PHP family) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXB7_9FIRM
Predicted metal-dependent phosphoesterases (PHP family) {ECO:0000313|EMBL:CCX83504.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_105_000M1_scaffold_636_6
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4886..5182)
DNA (297bp) protein (99aa)
XRE family transcriptional regulator n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TKP8_9FIRM
XRE family transcriptional regulator {ECO:0000313|EMBL:CDC73968.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
XRE family transcriptional regulator
L3_105_000M1_scaffold_636_7
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5734..6888
DNA (1155bp) protein (385aa)
Bacitracin transport ATP-binding protein BcrA n=1 Tax=Roseburia sp. CAG:45 RepID=R6NNN2_9FIRM
Bacitracin transport ATP-binding protein BcrA {ECO:0000313|EMBL:CDC12835.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
ABC-type multidrug transport system, ATPase component
L3_105_000M1_scaffold_636_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6885..7748
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BXM0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI76985.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_105_000M1_scaffold_636_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7769..9274
DNA (1506bp) protein (502aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67175.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ABC-type uncharacterized transport system.
L3_105_000M1_scaffold_636_10
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9353..10366
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BZX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74702.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L3_105_000M1_scaffold_636_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10498..11505
DNA (1008bp) protein (336aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
aspartate--ammonia ligase, AsnA-type (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBA8_9FIRM
L3_105_000M1_scaffold_636_12
Staphylococcus sp. CAG:324, Tenericutes, Bacteria

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11670..13301
DNA (1632bp) protein (544aa)
cls; cardiolipin synthetase (EC:2.7.8.-)
Phospholipase D/Transphosphatidylase n=1 Tax=Staphylococcus sp. CAG:324 RepID=R6TWJ6_9STAP
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:CDC72291.1}; TaxID=1262969 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus; environmental samples.;" source="Staphylococcus sp. CAG:324.;"
L3_105_000M1_scaffold_636_13
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

Not on your lists

13367..14254
DNA (888bp) protein (296aa)
DegV family EDD domain-containing protein n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5R8A7_9FIRM
DegV family EDD domain-containing protein {ECO:0000313|EMBL:CCZ29177.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
DegV protein
L3_105_000M1_scaffold_636_14
Firmicutes bacterium CAG:313, Tenericutes, Bacteria

Not on your lists

14401..16239
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:313 RepID=R6XQC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD21309.1}; TaxID=1263017 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:313.;"
yloV; hypothetical protein
L3_105_000M1_scaffold_636_15
Mycoplasma sp. CAG:776, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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comp(16360..16977)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Mycoplasma sp. CAG:776 RepID=R7NED5_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:CDF11110.1}; TaxID=1262906 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:776.;"
hypothetical protein
L3_105_000M1_scaffold_636_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17124..17675
DNA (552bp) protein (184aa)
UPF0340 protein FAEPRAA2165_02578 n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8D8_9FIRM
UPF0340 protein FAEPRAA2165_02578 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
conserved hypothetical protein TIGR01440
L3_105_000M1_scaffold_636_17
unknown

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comp(18003..18668)
DNA (666bp) protein (222aa)

This feature has no annotations

L3_105_000M1_scaffold_636_18
unknown

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19264..20025
DNA (762bp) protein (254aa)

This feature has no annotations

L3_105_000M1_scaffold_636_19
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20394..20903)
DNA (510bp) protein (170aa)
HTH/TPR domain-containing protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SW96_9CLOT
HTH/TPR domain-containing protein {ECO:0000313|EMBL:CDC64250.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_105_000M1_scaffold_636_20
unknown

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comp(21352..21525)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_105_000M1_scaffold_636_21
Mycoplasma sp. CAG:877, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(21590..21931)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Mycoplasma sp. CAG:877 RepID=R5LLM3_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:CCY80055.1}; TaxID=1262907 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:877.;"
hypothetical protein
L3_105_000M1_scaffold_636_22
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(22260..22760)
DNA (501bp) protein (167aa)
C_GCAxxG_C_C family probable redox protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K760_9FIRM
C_GCAxxG_C_C family probable redox protein {ECO:0000313|EMBL:CDE72140.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
C_GCAxxG_C_C family probable redox protein
L3_105_000M1_scaffold_636_23
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22992..23582)
DNA (591bp) protein (197aa)
Putative repressor LexA n=1 Tax=Clostridium leptum DSM 753 RepID=A7VTE0_9CLOT
Putative repressor LexA {ECO:0000313|EMBL:EDO61436.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
LexA repressor
L3_105_000M1_scaffold_636_24
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23899..24396
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1WRN6_ANEAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67774.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_105_000M1_scaffold_636_25
unknown

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24393..24788
DNA (396bp) protein (132aa)

This feature has no annotations

L3_105_000M1_scaffold_636_26
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

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24806..26257
DNA (1452bp) protein (484aa)
Phage terminase, large subunit, PBSX family n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1LSV0_9FIRM
Phage terminase, large subunit, PBSX family {ECO:0000313|EMBL:EHO53949.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
phage terminase, large subunit, PBSX family
L3_105_000M1_scaffold_636_27
unknown

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26622..26879
DNA (258bp) protein (86aa)

This feature has no annotations

L3_105_000M1_scaffold_636_28
Streptococcus infantarius, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(27021..28220)
DNA (1200bp) protein (400aa)
Putative integral membrane protein n=1 Tax=Streptococcus infantarius (strain CJ18) RepID=H6PCQ8_STRIC
hypothetical protein
Putative integral membrane protein {ECO:0000313|EMBL:AEZ63138.1}; TaxID=1069533 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus infantarius (strain CJ18).;"
L3_105_000M1_scaffold_636_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28413..29147)
DNA (735bp) protein (245aa)
Polar amino acid transport system ATP-binding protein (EC:3.6.3.21)
Polar amino acid transport system ATP-binding protein {ECO:0000313|EMBL:CCO05348.1}; EC=3.6.3.21 {ECO:0000313|EMBL:CCO05348.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter, ATP-binding protein id=3760900 bin=GWF2_Clostridiales_36_10 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
L3_105_000M1_scaffold_636_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29134..30534)
DNA (1401bp) protein (467aa)
ABC transporter, permease protein n=2 Tax=Clostridiales RepID=B0NFD7_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS06567.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
polar amino acid ABC transporter inner membrane subunit
Displaying items 1-30 of 40 in total

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