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L3_105_000M1_scaffold_2014

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2014_1
unknown

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1..84
DNA (84bp) protein (28aa)

This feature has no annotations

L3_105_000M1_scaffold_2014_2
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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81..668
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DM62_9FIRM
imidazoleglycerol-phosphate dehydratase
L3_105_000M1_scaffold_2014_3
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

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668..1282
DNA (615bp) protein (205aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W5455.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7S9_9BACT
imidazole glycerol phosphate synthase subunit HisH
L3_105_000M1_scaffold_2014_4
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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1293..2006
DNA (714bp) protein (238aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QGS7_9FIRM
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
L3_105_000M1_scaffold_2014_5
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2003..2761
DNA (759bp) protein (253aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
imidazole glycerol phosphate synthase subunit hisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYJ3_9FIRM
L3_105_000M1_scaffold_2014_6
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2790..3479
DNA (690bp) protein (230aa)
hisI_hisIE; histidine biosynthesis bifunctional protein HisIE (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein HisIE n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y4A8_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L3_105_000M1_scaffold_2014_7
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4426..6327
DNA (1902bp) protein (634aa)
Putative epimerase/dehydratase WbiI n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PX51_9FIRM
Putative epimerase/dehydratase WbiI {ECO:0000313|EMBL:CCZ20818.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
nucleoside-diphosphate sugar epimerase
L3_105_000M1_scaffold_2014_8
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6351..7151
DNA (801bp) protein (267aa)
Capsular polysaccharide biosynthesis protein CpsC n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LEK4_ACEWD
cpsC; capsular polysaccharide biosynthesis protein CpsC
Capsular polysaccharide biosynthesis protein CpsC {ECO:0000313|EMBL:AFA48107.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_105_000M1_scaffold_2014_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7202..7975
DNA (774bp) protein (258aa)
epsB; capsular polysaccharide biosynthesis protein EpsB (EC:2.7.10.2)
Capsular polysaccharide biosynthesis protein EpsB n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HLZ3_9FIRM
Capsular polysaccharide biosynthesis protein EpsB {ECO:0000313|EMBL:CDB26972.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_105_000M1_scaffold_2014_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7988..8701
DNA (714bp) protein (238aa)
cpsB; tyrosine-protein phosphatase CpsB (EC:3.1.3.48)
PHP domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VSC5_9FIRM
PHP domain protein {ECO:0000313|EMBL:CDD01508.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_105_000M1_scaffold_2014_11
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8739..9527
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LEK7_ACEWD
Uncharacterized protein {ECO:0000313|EMBL:AFA48110.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_105_000M1_scaffold_2014_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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9571..10557
DNA (987bp) protein (329aa)
Putative membrane-bound protein LytR n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Z9F0_9FIRM
putative membrane-bound protein LytR
Putative membrane-bound protein LytR {ECO:0000313|EMBL:CDD27112.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_105_000M1_scaffold_2014_13
Rickettsia canadensis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10761..11714
DNA (954bp) protein (318aa)
Minor teichoic acids biosynthesis protein ggab (Ggab) n=1 Tax=Rickettsia canadensis str. CA410 RepID=H6PFA4_RICCA
minor teichoic acids biosynthesis protein ggab (ggab)
Minor teichoic acids biosynthesis protein ggab (Ggab) {ECO:0000313|EMBL:ABV73687.1}; TaxID=293613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; belli group.;" source="Rickettsia canadensis (strain McKiel).;"
L3_105_000M1_scaffold_2014_14
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11726..12793
DNA (1068bp) protein (356aa)
Putative polysaccharide polymerase protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q068_9FIRM
Putative polysaccharide polymerase protein {ECO:0000313|EMBL:CCZ19744.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
putative polysaccharide polymerase protein
L3_105_000M1_scaffold_2014_15
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12793..13983
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PU73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ19743.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_105_000M1_scaffold_2014_16
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14006..15175
DNA (1170bp) protein (390aa)
Glycosyltransferase group 1 family protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EW62_9FIRM
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDE06661.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
glycosyl transferase 4
L3_105_000M1_scaffold_2014_17
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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15172..16377
DNA (1206bp) protein (402aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3X1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDS74355.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
hypothetical protein
L3_105_000M1_scaffold_2014_18
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16374..17900
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YT60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA19817.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
polysaccharide production protein
L3_105_000M1_scaffold_2014_19
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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17897..19027
DNA (1131bp) protein (377aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3X1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDS74355.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
quinone oxidoreductase
L3_105_000M1_scaffold_2014_20
unknown

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comp(19083..19343)
DNA (261bp) protein (87aa)

This feature has no annotations

Displaying 20 items

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