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L3_105_000M1_scaffold_2830

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2830_1
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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117..1223
DNA (1107bp) protein (369aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N6S6_9FIRM
L3_105_000M1_scaffold_2830_2
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1307..2554
DNA (1248bp) protein (416aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MH37_ALKOO
L3_105_000M1_scaffold_2830_3
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2621..3388
DNA (768bp) protein (256aa)
POTRA domain protein FtsQ-type n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XBI9_9FIRM
POTRA domain protein FtsQ-type {ECO:0000313|EMBL:CDA12200.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
Cell division septal protein
L3_105_000M1_scaffold_2830_4
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3482..4801
DNA (1320bp) protein (440aa)
Cell division protein FtsZ n=1 Tax=Clostridium sp. CAG:352 RepID=R6QR91_9CLOT
ftsZ; Cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_2830_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5756..6472)
DNA (717bp) protein (239aa)
D-methionine ABC superfamily ATP binding cassette transporter membrane protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXG5_9FIRM
D-methionine ABC superfamily ATP binding cassette transporter membrane protein {ECO:0000313|EMBL:CDB42558.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ABC-type metal ion transport system, permease component
L3_105_000M1_scaffold_2830_6
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(6456..7475)
DNA (1020bp) protein (340aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
D-methionine ABC superfamily ATP binding cassette transporter ABC protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E394_9FIRM
ABC-type metal ion transport system, ATPase component
L3_105_000M1_scaffold_2830_7
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7535..8389)
DNA (855bp) protein (285aa)
D-methionine ABC superfamily ATP binding cassette transporter binding protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6CQC2_9CLOT
D-methionine ABC superfamily ATP binding cassette transporter binding protein {ECO:0000313|EMBL:CDA67417.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
ABC-type metal ion transport system, periplasmic component/surface antigen
L3_105_000M1_scaffold_2830_8
unknown

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comp(8659..8772)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_105_000M1_scaffold_2830_9
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8971..9345)
DNA (375bp) protein (125aa)
Transcriptional regulator, XRE family n=2 Tax=Thermoanaerobacter RepID=D3T369_THEIA
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADD02671.1}; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter italicus (strain DSM 9252 / Ab9).;"
L3_105_000M1_scaffold_2830_10
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10535..11494)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
tRNA-dihydrouridine synthase id=2288508 bin=GWB2_Clostridiales_37_7 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
tRNA-U20-dihydrouridine synthase
L3_105_000M1_scaffold_2830_11
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11498..12460)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NI83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF12470.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
hypothetical protein
L3_105_000M1_scaffold_2830_12
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12587..12874
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VV18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04946.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_105_000M1_scaffold_2830_13
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12862..14007)
DNA (1146bp) protein (382aa)
UvrABC system protein C n=1 Tax=Finegoldia magna ACS-171-V-Col3 RepID=D9PTH1_FINMA
excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=768713 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ACS-171-V-Col3.;"
Displaying 13 items

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