ggKbase home page

L3_105_000M1_scaffold_1642

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1642_1
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..598)
DNA (597bp) protein (199aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X7Z3_OXAFO
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:EEO29319.1}; TaxID=556269 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes OXCC13.;"
hypothetical protein
L3_105_000M1_scaffold_1642_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1282..1776
DNA (495bp) protein (165aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=7 Tax=Clostridium thermocellum RepID=A3DBN9_CLOTH
RNA methyltransferase
L3_105_000M1_scaffold_1642_3
unknown

Not on your lists

comp(1827..1955)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_105_000M1_scaffold_1642_4
Streptococcus sanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2150..2899
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Streptococcus sanguinis SK49 RepID=F3V078_STRSA
Uncharacterized protein {ECO:0000313|EMBL:EGJ36281.1}; TaxID=888808 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sanguinis SK49.;"
hypothetical protein
L3_105_000M1_scaffold_1642_5
unknown

Not on your lists

3932..4951
DNA (1020bp) protein (340aa)

This feature has no annotations

L3_105_000M1_scaffold_1642_6
unknown

Not on your lists

4951..6081
DNA (1131bp) protein (377aa)

This feature has no annotations

L3_105_000M1_scaffold_1642_7
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(6315..6686)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AXE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX47663.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes
L3_105_000M1_scaffold_1642_8
unknown

Not on your lists

comp(7533..7970)
DNA (438bp) protein (146aa)

This feature has no annotations

L3_105_000M1_scaffold_1642_9
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9188..10147
DNA (960bp) protein (320aa)
Replication initiation and membrane attachment protein DnaB/DnaD family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A197_9CLOT
Replication initiation and membrane attachment protein DnaB/DnaD family {ECO:0000313|EMBL:CCX36750.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
primosome subunit DnaD
L3_105_000M1_scaffold_1642_10
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10137..11120
DNA (984bp) protein (328aa)
DNA replication protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCV3_RUMC1
DNA replication protein
DNA replication protein {ECO:0000313|EMBL:CBL17448.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_105_000M1_scaffold_1642_11
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11135..12784
DNA (1650bp) protein (550aa)
Putative uncharacterized protein n=1 Tax=Paenibacillus lactis 154 RepID=G4H8Z1_9BACL
Putative uncharacterized protein {ECO:0000313|EMBL:EHB68326.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
hypothetical protein
L3_105_000M1_scaffold_1642_12
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13971..14702
DNA (732bp) protein (244aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GUU0_SELRL
rsmG; putative ribosomal RNA small subunit methyltransferase G
L3_105_000M1_scaffold_1642_13
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15360..16289
DNA (930bp) protein (310aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=2 Tax=Butyrivibrio RepID=D4RZB5_9FIRM
L3_105_000M1_scaffold_1642_14
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16488..17159
DNA (672bp) protein (224aa)
HAD hydrolase, family IA n=1 Tax=Eubacterium sp. 14-2 RepID=S0IRJ0_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EOT22602.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
HAD-superfamily hydrolase
L3_105_000M1_scaffold_1642_15
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18157..19677)
DNA (1521bp) protein (507aa)
Peptidoglycan-binding lysin domain n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U9B1_ETHHY
Peptidoglycan-binding lysin domain
Peptidoglycan-binding lysin domain {ECO:0000313|EMBL:ADU27270.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_105_000M1_scaffold_1642_16
unknown

Not on your lists

19884..20069
DNA (186bp) protein (62aa)

This feature has no annotations

L3_105_000M1_scaffold_1642_17
unknown

Not on your lists

20386..21717
DNA (1332bp) protein (444aa)

This feature has no annotations

Displaying 17 items

View Taxonomy