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L3_105_000M1_scaffold_1803

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1803_1
unknown

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comp(8..1429)
DNA (1422bp) protein (474aa)
NAD+ synthetase
L3_105_000M1_scaffold_1803_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1875..5339)
DNA (3465bp) protein (1155aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000255|HAMAP-Rule:MF_01451}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01451};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01451};; ATP-dependent helicase/nuclease AddA {ECO:0000255|HAMAP-Rule:MF_01451}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
ATP-dependent helicase/nuclease subunit A n=4 Tax=Clostridium thermocellum RepID=E6URD6_CLOTL
recombination helicase AddA
L3_105_000M1_scaffold_1803_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5332..8592)
DNA (3261bp) protein (1087aa)
Putative ATP-dependent nuclease subunit B n=1 Tax=Clostridium leptum CAG:27 RepID=R6P1E1_9CLOT
Putative ATP-dependent nuclease subunit B {ECO:0000313|EMBL:CDC03782.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_105_000M1_scaffold_1803_4
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9288..10058
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RRF4_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
RNA polymerase sigma 28 subunit SigG
L3_105_000M1_scaffold_1803_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10812..11207
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZA51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25672.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Thioesterase superfamily
L3_105_000M1_scaffold_1803_6
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11413..12246
DNA (834bp) protein (278aa)
Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold (EC:3.1.1.3)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NL99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF12858.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
L3_105_000M1_scaffold_1803_7
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(12469..13905)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TP01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC69616.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_105_000M1_scaffold_1803_8
unknown

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comp(14013..15338)
DNA (1326bp) protein (442aa)

This feature has no annotations

L3_105_000M1_scaffold_1803_9
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(15760..16398)
DNA (639bp) protein (213aa)
Signal peptidase I n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR99_9FIRM
Signal peptidase I {ECO:0000313|EMBL:CCX45473.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
sipW; type I signal peptidase SipW
L3_105_000M1_scaffold_1803_10
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17350..18846)
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I4Q9_CLOCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL76563.1}; Flags: Precursor;; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_105_000M1_scaffold_1803_11
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19249..19587)
DNA (339bp) protein (113aa)
Histidine triad (HIT) protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6TYY6_9CLOT
Histidine triad (HIT) protein {ECO:0000313|EMBL:CDC63802.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L3_105_000M1_scaffold_1803_12
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(19633..21408)
DNA (1776bp) protein (592aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Alanine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TTY8_9FIRM
alaS; alanyl-tRNA synthetase
Displaying 12 items

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