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L3_105_000M1_scaffold_4505

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_4505_1
unknown

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347..532
DNA (186bp) protein (62aa)

This feature has no annotations

L3_105_000M1_scaffold_4505_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(845..2650)
DNA (1806bp) protein (602aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ICG7_9FIRM
L3_105_000M1_scaffold_4505_3
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2671..3366)
DNA (696bp) protein (232aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJN7_9FIRM
L3_105_000M1_scaffold_4505_4
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3363..3935)
DNA (573bp) protein (191aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:557 RepID=R6GG60_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
16S rRNA processing protein RimM
L3_105_000M1_scaffold_4505_5
Veillonella sp. oral taxon 780, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(3936..4166)
DNA (231bp) protein (77aa)
UPF0109 protein HMPREF9200_1180 n=1 Tax=Veillonella sp. oral taxon 780 str. F0422 RepID=F9N519_9FIRM
UPF0109 protein HMPREF9200_1180 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=944564 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. oral taxon 780 str. F0422.;"
nucleic acid binding protein
L3_105_000M1_scaffold_4505_6
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4262..4504)
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D501
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; TaxID=386415 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi (strain NT).;"
L3_105_000M1_scaffold_4505_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(4621..5964)
DNA (1344bp) protein (448aa)
Signal recognition particle protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LQX1_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
signal recognition particle protein
L3_105_000M1_scaffold_4505_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5979..6368)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M2H8_9FIRM
UPF0122 protein C814_00165 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_105_000M1_scaffold_4505_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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6660..7454
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00975.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_105_000M1_scaffold_4505_10
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7987..8847)
DNA (861bp) protein (287aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
PAS domain S-box (EC:2.7.13.3)
PAS domain S-box protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J1V3_9FIRM
L3_105_000M1_scaffold_4505_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9047..9292)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HZY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33709.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
putative efflux protein, MATE family
Displaying 11 items

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