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L3_105_000M1_scaffold_951

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_951_1
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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191..865
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Clostridium sp. CAG:138 RepID=R6ALC9_9CLOT
two component transcriptional regulator, winged helix family
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDA52818.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
L3_105_000M1_scaffold_951_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

862..1935
DNA (1074bp) protein (358aa)
sensor histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Maree / Type A3).;"
Sensor histidine kinase n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KXZ9_CLOBM
L3_105_000M1_scaffold_951_3
unknown

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comp(2648..3190)
DNA (543bp) protein (181aa)

This feature has no annotations

L3_105_000M1_scaffold_951_4
unknown

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comp(4157..5236)
DNA (1080bp) protein (360aa)

This feature has no annotations

L3_105_000M1_scaffold_951_5
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5230..5805)
DNA (576bp) protein (192aa)
PAP2 family protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VBV1_9CLOT
PAP2 family protein {ECO:0000313|EMBL:EDO58823.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
PA-phosphatase like phosphoesterase
L3_105_000M1_scaffold_951_6
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

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5947..7002
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:822 RepID=R5J1S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY46529.1}; TaxID=1263032 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
hypothetical protein
L3_105_000M1_scaffold_951_7
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7899..8699
DNA (801bp) protein (267aa)
putative transketolase N-terminal section (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z8F3_9FIRM
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EDM50676.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
L3_105_000M1_scaffold_951_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8702..9688
DNA (987bp) protein (329aa)
putative transketolase C-terminal section (EC:2.2.1.1)
Putative transketolase C-terminal section {ECO:0000313|EMBL:CDZ24692.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CDZ24692.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
transketolase subunit B id=1910474 bin=GWD2_Clostridiales_32_19 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
L3_105_000M1_scaffold_951_9
Clostridium sp. CAG:524, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9719..10708
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:524 RepID=R6BCC7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA60880.1}; TaxID=1262817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:524.;"
hypothetical protein
L3_105_000M1_scaffold_951_10
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11012..12712
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q3R6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23445.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
hypothetical protein
L3_105_000M1_scaffold_951_11
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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14023..16965
DNA (2943bp) protein (981aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYS4_MAHA5
CUT1 family carbohydrate ABC transporter substrate-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:AEE95669.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_951_12
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16982..17890
DNA (909bp) protein (303aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium sp. CAG:448 RepID=R6SRP0_9CLOT
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDC60189.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
ABC transporter, permease protein
L3_105_000M1_scaffold_951_13
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17908..18906
DNA (999bp) protein (333aa)
ABC transporter permease n=1 Tax=Paenibacillus daejeonensis RepID=UPI00036F1DE0
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EPY04649.1}; TaxID=1117108 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei TS-15.;"
CUT1 family carbohydrate ABC transporter membrane protein 2
L3_105_000M1_scaffold_951_14
Paenibacillus sp. FSL R7-277, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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18920..20557
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI0003690AE3
NHL repeat containing protein {ECO:0000313|EMBL:ETT73198.1}; TaxID=1227352 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-277.;"
hypothetical protein
L3_105_000M1_scaffold_951_15
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

20554..21267
DNA (714bp) protein (238aa)
NHL repeat containing protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYS7_MAHA5
NHL repeat containing protein
NHL repeat containing protein {ECO:0000313|EMBL:AEE95672.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_951_16
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21279..24014
DNA (2736bp) protein (912aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYT1_MAHA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE95676.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_951_17
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24020..24970
DNA (951bp) protein (317aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ER75_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDE04961.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
binding-protein-dependent transport system inner membrane protein
L3_105_000M1_scaffold_951_18
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

24990..26012
DNA (1023bp) protein (341aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYT3_MAHA5
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEE95678.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_951_19
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

26585..28477
DNA (1893bp) protein (631aa)
ABC transporter related protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UV43_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDC74562.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
HlyB/MsbA family ABC transporter
L3_105_000M1_scaffold_951_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28909..29238)
DNA (330bp) protein (110aa)
XRE family transcriptional regulator n=1 Tax=Brevibacillus brevis RepID=UPI00036F8D45
Helix-turn-helix protein {ECO:0000313|EMBL:EKQ52406.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
XRE family transcriptional regulator
L3_105_000M1_scaffold_951_21
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29427..30152)
DNA (726bp) protein (242aa)
Probable transcriptional regulatory protein Ethha_0024 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5E8_ETHHY
hypothetical protein
Probable transcriptional regulatory protein Ethha_0024 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_105_000M1_scaffold_951_22
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30255..31877)
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY91334.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_105_000M1_scaffold_951_23
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31888..32631)
DNA (744bp) protein (248aa)
spoU3; RNA methyltransferase, TrmH family group 3 (EC:2.1.1.-)
RNA methyltransferase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KW17_9CLOT
RNA methyltransferase {ECO:0000313|EMBL:KGG79661.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
L3_105_000M1_scaffold_951_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32631..33254)
DNA (624bp) protein (208aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Uracil phosphoribosyltransferase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P074_9FIRM
uracil phosphoribosyltransferase
L3_105_000M1_scaffold_951_25
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(33295..33717)
DNA (423bp) protein (141aa)
ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=2 Tax=root RepID=R5AWQ8_9FIRM
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:CCX47790.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_105_000M1_scaffold_951_26
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34871..35833)
DNA (963bp) protein (321aa)
tRNA threonylcarbamoyl adenosine modification protein YeaZ n=1 Tax=Clostridium sp. CAG:678 RepID=R5KM00_9CLOT
tRNA threonylcarbamoyl adenosine modification protein YeaZ {ECO:0000313|EMBL:CCY67870.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
peptidase M22 family protein
L3_105_000M1_scaffold_951_27
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35830..36108)
DNA (279bp) protein (93aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7J1_9FIRM
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CDB42459.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
conserved hypothetical nucleotide-binding protein
Displaying 27 items

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