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L3_105_000M1_scaffold_3086

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_3086_1
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(2..250)
DNA (249bp) protein (83aa)
Arogenate dehydrogenase {ECO:0000313|EMBL:CRH93135.1}; EC=1.3.1.43 {ECO:0000313|EMBL:CRH93135.1};; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IBT7_9FIRM
L3_105_000M1_scaffold_3086_2
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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comp(243..1460)
DNA (1218bp) protein (406aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I1C1_9FIRM
L3_105_000M1_scaffold_3086_3
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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comp(1497..1934)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
3-dehydroquinate dehydratase n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BUA3_9FIRM
hypothetical protein
L3_105_000M1_scaffold_3086_4
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1931..3187)
DNA (1257bp) protein (419aa)
Shikimate kinase n=1 Tax=Clostridium sp. CAG:349 RepID=R6XUF6_9CLOT
Shikimate kinase {ECO:0000313|EMBL:CDD09902.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
shikimate 5-dehydrogenase
L3_105_000M1_scaffold_3086_5
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(3190..4284)
DNA (1095bp) protein (365aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6EM69_9FIRM
L3_105_000M1_scaffold_3086_6
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4289..5311)
DNA (1023bp) protein (341aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6K6_9FIRM
L3_105_000M1_scaffold_3086_7
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5319..6458)
DNA (1140bp) protein (380aa)
Prephenate dehydratase (EC:4.2.1.51)
Chorismate mutase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QGQ0_9FIRM
Chorismate mutase {ECO:0000313|EMBL:CCZ20267.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L3_105_000M1_scaffold_3086_8
unknown

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comp(6720..8093)
DNA (1374bp) protein (458aa)

This feature has no annotations

L3_105_000M1_scaffold_3086_9
R_Deltaproteobacteria_50_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8118..9608)
DNA (1491bp) protein (497aa)
FAD dependent oxidoreductase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002F94EED
HI0933 family protein
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_50_16_curated
L3_105_000M1_scaffold_3086_10
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9688..10968)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. XPD2006 RepID=UPI0003B5ECD0
YbbR-like protein {ECO:0000313|EMBL:CDE53011.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
hypothetical protein
L3_105_000M1_scaffold_3086_11
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10970..11896)
DNA (927bp) protein (309aa)
TIGR00159 family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2ESE1_CLOS4
TIGR00159 family protein {ECO:0000313|EMBL:ERI96001.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_105_000M1_scaffold_3086_12
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12316..12576)
DNA (261bp) protein (87aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8N2_9FIRM
L3_105_000M1_scaffold_3086_13
Gemella sanguinis, Gemella, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12646..12972)
DNA (327bp) protein (109aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=562983 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XI. Incertae Sedis; Gemella.;" source="Gemella sanguinis M325.;"
DNA ligase n=1 Tax=Gemella sanguinis M325 RepID=F3AA15_9BACL
DNA ligase
Displaying 13 items

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