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L3_105_000M1_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_29_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..432)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RR31_9FIRM
TraG/TraD family protein {ECO:0000313|EMBL:EDM99131.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Type IV secretory pathway, VirD4 components
L3_105_000M1_scaffold_29_2
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(429..920)
DNA (492bp) protein (164aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=C7H8T5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE12724.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_105_000M1_scaffold_29_3
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1031..1282)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Streptomyces collinus Tu 365 RepID=S5VWP2_STRCU
Uncharacterized protein {ECO:0000313|EMBL:KIE47899.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
hypothetical protein
L3_105_000M1_scaffold_29_4
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1342..2148)
DNA (807bp) protein (269aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QIK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62730.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_105_000M1_scaffold_29_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2197..2403)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF38463.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_105_000M1_scaffold_29_6
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3148..3561
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12639.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_29_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3651..5123
DNA (1473bp) protein (491aa)
Putative metal-dependent phosphoesterase PHP family n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN32_9CLOT
Putative metal-dependent phosphoesterase PHP family {ECO:0000313|EMBL:CDC12640.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
metal-dependent phosphoesterase, PHP family
L3_105_000M1_scaffold_29_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5233..5829
DNA (597bp) protein (199aa)
HD domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P2D0_9CLOT
HD domain protein {ECO:0000313|EMBL:CDC12641.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
metal dependent phosphohydrolase
L3_105_000M1_scaffold_29_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5840..6340
DNA (501bp) protein (167aa)
NUDIX domain-containing protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PS95_9CLOT
NUDIX domain-containing protein {ECO:0000313|EMBL:CDC12642.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
NUDIX hydrolase
L3_105_000M1_scaffold_29_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6321..6749
DNA (429bp) protein (143aa)
acetyltransferase (EC:2.3.1.-)
Acetyltransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKH3_9CLOT
Acetyltransferase {ECO:0000313|EMBL:CDC12643.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_29_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6845..8176
DNA (1332bp) protein (444aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN38_9CLOT
Metallophosphoesterase {ECO:0000313|EMBL:CDC12645.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
metallophosphoesterase
L3_105_000M1_scaffold_29_12
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8349..9659
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PS99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12647.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_29_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9660..10991
DNA (1332bp) protein (444aa)
GTPase Der n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKH7_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ribosome-associated GTPase EngA
L3_105_000M1_scaffold_29_14
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10988..11482
DNA (495bp) protein (165aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ruvC; Crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW70_9CLOT
L3_105_000M1_scaffold_29_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11505..12113
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN41_9CLOT
Holliday junction DNA helicase RuvA
L3_105_000M1_scaffold_29_16

Not on your lists

12129..13160
DNA (1032bp) protein (344aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1393421 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig137.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QBX6_9FIRM
L3_105_000M1_scaffold_29_17
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13162..14028
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PSB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12662.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Predicted SAM-dependent methyltransferases
L3_105_000M1_scaffold_29_18
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14099..14944
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Energy-coupling factor transporter ATP-binding protein EcfA 1 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW80_9CLOT
cobalt transporter ATP-binding subunit
L3_105_000M1_scaffold_29_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14941..15807
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ecfA1; Energy-coupling factor transporter ATP-binding protein EcfA 1 (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN58_9CLOT
L3_105_000M1_scaffold_29_20
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15804..16619
DNA (816bp) protein (272aa)
Cobalt transport protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P2F4_9CLOT
Cobalt transport protein {ECO:0000313|EMBL:CDC12666.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter membrane component
L3_105_000M1_scaffold_29_21
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16629..17363
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKJ4_9CLOT
tRNA pseudouridine synthase A
L3_105_000M1_scaffold_29_22
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17384..18550
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12670.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_29_23
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18610..19302
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PSC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12672.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
putative membrane protein
L3_105_000M1_scaffold_29_24
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19321..19944
DNA (624bp) protein (208aa)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKJ8_9CLOT
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDC12673.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
CDP-alcohol phosphatidyltransferase
L3_105_000M1_scaffold_29_25
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19963..22254
DNA (2292bp) protein (764aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN66_9CLOT
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:CDC12675.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
L3_105_000M1_scaffold_29_26
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22372..22812
DNA (441bp) protein (147aa)
Stage V sporulation protein AC n=1 Tax=Clostridium sp. CAG:413 RepID=R6PSC6_9CLOT
Stage V sporulation protein AC {ECO:0000313|EMBL:CDC12677.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
stage V sporulation protein AC
L3_105_000M1_scaffold_29_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22817..23833
DNA (1017bp) protein (339aa)
Stage V sporulation protein AD n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW89_9CLOT
Stage V sporulation protein AD {ECO:0000313|EMBL:CDC12679.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
spoVAD; Stage V sporulation protein AD
L3_105_000M1_scaffold_29_28
unknown

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23846..23989
DNA (144bp) protein (48aa)

This feature has no annotations

L3_105_000M1_scaffold_29_29
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23995..30990
DNA (6996bp) protein (2332aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12680.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
carbohydrate binding protein
L3_105_000M1_scaffold_29_30
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31665..36704
DNA (5040bp) protein (1680aa)
Ribosomal protein L36 n=1 Tax=Clostridium sp. CAG:413 RepID=R6P2G8_9CLOT
Ribosomal protein L36 {ECO:0000313|EMBL:CDC12681.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Displaying items 1-30 of 147 in total

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