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L3_105_000M1_scaffold_1399

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1399_1
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(293..1390)
DNA (1098bp) protein (366aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9M9_9FIRM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
L3_105_000M1_scaffold_1399_2

Not on your lists

comp(1387..2661)
DNA (1275bp) protein (425aa)
dTMP kinase {ECO:0000256|SAAS:SAAS00031932}; EC=2.7.4.9 {ECO:0000256|SAAS:SAAS00031932};; TaxID=1393376 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig11.;"
Thymidylate kinase n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I4J0_CLOCE
thymidylate kinase
L3_105_000M1_scaffold_1399_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2646..4013)
DNA (1368bp) protein (456aa)
Arginine/lysine/ornithine decarboxylases n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ICE3_9FIRM
Arginine/lysine/ornithine decarboxylases {ECO:0000313|EMBL:CDE48172.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Orn/Lys/Arg decarboxylase major subunit
L3_105_000M1_scaffold_1399_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4307..4585
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48171.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_1399_5
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

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4727..6550
DNA (1824bp) protein (608aa)
Ig-like domain-containing surface protein id=4538411 bin=GWF2_Bacteroidetes_29_10 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
Surface antigen BspA-like {ECO:0000313|EMBL:EAY00994.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
hypothetical protein
L3_105_000M1_scaffold_1399_6
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(6612..7454)
DNA (843bp) protein (281aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EJU26616.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EJU26616.1};; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Selenomonas sp. CM52 RepID=J4WPM4_9FIRM
L3_105_000M1_scaffold_1399_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7608..8672
DNA (1065bp) protein (355aa)
Cell surface protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II25_9FIRM
Cell surface protein {ECO:0000313|EMBL:CDE51245.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
cell surface protein
L3_105_000M1_scaffold_1399_8
unknown

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comp(9025..9414)
DNA (390bp) protein (130aa)

This feature has no annotations

L3_105_000M1_scaffold_1399_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9706..10350)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51684.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_105_000M1_scaffold_1399_10

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comp(10456..10635)
DNA (180bp) protein (60aa)
Transposase, IS4 family protein (Fragment) n=1 Tax=human gut metagenome RepID=K1S846_9ZZZZ
Transposase, IS4 family protein {ECO:0000313|EMBL:EKC43671.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transposase IS4 family protein
L3_105_000M1_scaffold_1399_11

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comp(10954..11760)
DNA (807bp) protein (269aa)
Amino acid ABC transporter, periplasmic amino acid-binding protein n=1 Tax=human gut metagenome RepID=K1TX15_9ZZZZ
Amino acid ABC transporter, periplasmic amino acid-binding protein {ECO:0000313|EMBL:EKC77652.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
amino acid ABC transporter substrate-binding protein
L3_105_000M1_scaffold_1399_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11812..12555)
DNA (744bp) protein (248aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I812_9FIRM
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDE48009.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_105_000M1_scaffold_1399_13
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12562..13236)
DNA (675bp) protein (225aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBW8_9FIRM
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:CDE48007.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC-type amino acid transport system, permease component
L3_105_000M1_scaffold_1399_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13485..15299)
DNA (1815bp) protein (605aa)
Putative stage II sporulation protein D n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8R5_9FIRM
Putative stage II sporulation protein D {ECO:0000313|EMBL:CDE48005.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
SpoIID/LytB domain-containing protein
L3_105_000M1_scaffold_1399_15
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15397..16197)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I808_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48004.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
nucleotidyltransferase
L3_105_000M1_scaffold_1399_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16226..17386)
DNA (1161bp) protein (387aa)
Two component AraC family transcriptional regulator n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9N1_9FIRM
Two component AraC family transcriptional regulator {ECO:0000313|EMBL:CDE48003.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_105_000M1_scaffold_1399_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17471..18559)
DNA (1089bp) protein (363aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBW4_9FIRM
L3_105_000M1_scaffold_1399_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18617..19891)
DNA (1275bp) protein (425aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hom; homoserine dehydrogenase Hom (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I921_9FIRM
L3_105_000M1_scaffold_1399_19
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19938..20705)
DNA (768bp) protein (256aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Type III pantothenate kinase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8Q8_9FIRM
coaX; CoaX protein
L3_105_000M1_scaffold_1399_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20818..21405)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I804_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE47999.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_105_000M1_scaffold_1399_21
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21728..22642
DNA (915bp) protein (305aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9M5_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CDE47998.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
NAD-dependent dehydratase
L3_105_000M1_scaffold_1399_22
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23421..24179
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IAP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48566.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_105_000M1_scaffold_1399_23
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24181..25419
DNA (1239bp) protein (413aa)
Bacterial capsule synthesis protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IAE2_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:CDE48565.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_105_000M1_scaffold_1399_24
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25539..26150
DNA (612bp) protein (204aa)
XRE family transcriptional regulator n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJS4_9CLOT
XRE family transcriptional regulator {ECO:0000313|EMBL:CCX42089.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
DNA-binding protein
L3_105_000M1_scaffold_1399_25
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26417..27445)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IA35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48729.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Protein of unknown function (DUF2961).
L3_105_000M1_scaffold_1399_26
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27961..29334)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDV8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDE48732.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_105_000M1_scaffold_1399_27
unknown

Not on your lists

29441..29572
DNA (132bp) protein (44aa)

This feature has no annotations

L3_105_000M1_scaffold_1399_28
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29612..30655
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48733.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_105_000M1_scaffold_1399_29
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30771..31643
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IB10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48735.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_105_000M1_scaffold_1399_30
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31780..32814)
DNA (1035bp) protein (345aa)
GJ19447 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDW3_9FIRM
GJ19447 {ECO:0000313|EMBL:CDE48737.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Rhs element Vgr family protein
Displaying items 1-30 of 51 in total

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