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L3_105_000M1_scaffold_1919

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1919_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(129..959)
DNA (831bp) protein (277aa)
Transcription regulator (Yobd protein) n=4 Tax=Clostridium difficile RepID=C9YMG0_CLODR
yobD; transcription regulator (yobd protein)
Transcription regulator (Yobd protein) {ECO:0000313|EMBL:CBE04571.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_000M1_scaffold_1919_2
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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1337..1459
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DCV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74702.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
plasmid segregation actin-type ATPase ParM
L3_105_000M1_scaffold_1919_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2226..3506
DNA (1281bp) protein (427aa)
Plasmid recombination enzyme n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSY5_9BIFI
Plasmid recombination enzyme {ECO:0000313|EMBL:EEG70486.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR03455.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
recombinase
L3_105_000M1_scaffold_1919_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3503..4168
DNA (666bp) protein (222aa)
CHC2 zinc finger domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YL29_9FIRM
CHC2 zinc finger domain protein {ECO:0000313|EMBL:ERI80870.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
DNA primase (bacterial type)
L3_105_000M1_scaffold_1919_5
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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4146..5510
DNA (1365bp) protein (455aa)
Phage/plasmid primase P4 family C-terminal domain n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MRP9_9FIRM
Phage/plasmid primase P4 family C-terminal domain {ECO:0000313|EMBL:CDB88497.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
phage/plasmid primase, P4 family, C-terminal domain
L3_105_000M1_scaffold_1919_6
unknown

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5590..5886
DNA (297bp) protein (99aa)

This feature has no annotations

L3_105_000M1_scaffold_1919_7
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5947..6354
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2T1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37380.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_105_000M1_scaffold_1919_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6429..7496
DNA (1068bp) protein (356aa)
Virulence RhuM family protein n=1 Tax=Clostridium difficile P28 RepID=T4P311_CLODI
Virulence RhuM family protein {ECO:0000313|EMBL:EQJ61841.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_105_000M1_scaffold_1919_9
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7493..9166
DNA (1674bp) protein (558aa)
Resolvase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VP38_9FIRM
Resolvase {ECO:0000313|EMBL:EFV15411.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_105_000M1_scaffold_1919_10
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9237..9953
DNA (717bp) protein (239aa)
HNH endonuclease n=1 Tax=Bacillus cereus ATCC 10876 RepID=C2NAK2_BACCE
HNH endonuclease {ECO:0000313|EMBL:EEK47371.1}; TaxID=526980 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus ATCC 10876.;"
putative restriction endonuclease
L3_105_000M1_scaffold_1919_11
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10009..11745)
DNA (1737bp) protein (579aa)
Beta-galactosidase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I575_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:CDE46646.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
beta-galactosidase
L3_105_000M1_scaffold_1919_12
Listeria grayi, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12101..13162)
DNA (1062bp) protein (354aa)
Transcriptional regulator, LacI family n=1 Tax=Listeria grayi DSM 20601 RepID=D7UZM7_LISGR
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFI82872.1}; TaxID=525367 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria grayi DSM 20601.;"
lacI; LacI family transcriptional regulator
L3_105_000M1_scaffold_1919_13
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13541..14788
DNA (1248bp) protein (416aa)
Extracellular solute-binding protein family 1 n=2 Tax=root RepID=R6VVR4_9CLOT
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDD01065.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
family 1 extracellular solute-binding protein
L3_105_000M1_scaffold_1919_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14908..15876
DNA (969bp) protein (323aa)
ABC superfamily ATP binding cassette transporter membrane protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJC7_9FIRM
ABC superfamily ATP binding cassette transporter membrane protein {ECO:0000313|EMBL:CDE51408.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC transporter permease
L3_105_000M1_scaffold_1919_15
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15895..16770
DNA (876bp) protein (292aa)
Sugar ABC transporter n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ILA6_9FIRM
Sugar ABC transporter {ECO:0000313|EMBL:CDE51407.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
sugar ABC transporter ATP-binding protein
L3_105_000M1_scaffold_1919_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16867..17952
DNA (1086bp) protein (362aa)
Glycosyl hydrolase family 88 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIF6_9FIRM
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:CDE51405.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
glycosyl hydrolase family protein
L3_105_000M1_scaffold_1919_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17963..18751
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IHZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51404.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
carbohydrate-binding protein
L3_105_000M1_scaffold_1919_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18783..19889
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51403.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
Displaying 18 items

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