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L3_105_000M1_scaffold_2054

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2054_1
unknown

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comp(1..633)
DNA (633bp) protein (211aa)

This feature has no annotations

L3_105_000M1_scaffold_2054_2
Lactobacillus paraplantarum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(767..1657)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:288 RepID=R7FN38_9CLOT
Peptidoglycan-binding protein {ECO:0000313|EMBL:KGE76305.1}; TaxID=60520 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paraplantarum.;"
Extracellular protein
L3_105_000M1_scaffold_2054_3
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2218..2661)
DNA (444bp) protein (148aa)
DEAD/DEAH box helicase n=1 Tax=Thioalkalivibrio sp. ALgr3 RepID=UPI00035FBE16
Uncharacterized protein {ECO:0000313|EMBL:EGW43820.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
DEAD/DEAH box helicase
L3_105_000M1_scaffold_2054_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2739..3635)
DNA (897bp) protein (299aa)
Sugar kinases, ribokinase family (EC:2.7.1.15)
sugar kinase n=1 Tax=Butyrivibrio sp. AE2015 RepID=UPI0003B6CA7A
Putative ribokinase {ECO:0000313|EMBL:ERI79071.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L3_105_000M1_scaffold_2054_5

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comp(3723..6161)
DNA (2439bp) protein (813aa)
alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZVR1_MAHA5
Uncharacterized protein {ECO:0000313|EMBL:KKN90705.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L3_105_000M1_scaffold_2054_6
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

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comp(6190..7827)
DNA (1638bp) protein (546aa)
Extracellular solute-binding protein family 1 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZWS7_MAHA5
ABC-type sugar transport system periplasmic component-like protein {ECO:0000313|EMBL:KKW29581.1}; TaxID=1618989 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWD2_52_7.;"
ABC transporter substrate-binding protein
L3_105_000M1_scaffold_2054_7
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(7850..8755)
DNA (906bp) protein (302aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LND3_TREBD
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEE17891.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L3_105_000M1_scaffold_2054_8
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8838..9770)
DNA (933bp) protein (311aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SIE1_9BACL
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHQ61144.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
binding-protein-dependent transport system inner membrane protein
L3_105_000M1_scaffold_2054_9
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(9798..11918)
DNA (2121bp) protein (707aa)
Endo-1,4-beta-D-glucanase id=4569415 bin=GWC2_Planctomycetes_45_44 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
glycoside hydrolase family protein
Tax=GWC2_Planctomycetes_45_44_curated
L3_105_000M1_scaffold_2054_10
Branchiostoma floridae, Branchiostoma, Chordata, Metazoa

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comp(12012..13040)
DNA (1029bp) protein (343aa)
Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z3E7_BRAFL
Putative uncharacterized protein {ECO:0000313|EMBL:EEN52991.1}; TaxID=7739 species="Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma.;" source="Branchiostoma floridae (Florida lancelet) (Amphioxus).;"
hypothetical protein
L3_105_000M1_scaffold_2054_11
unknown

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comp(13085..16822)
DNA (3738bp) protein (1246aa)

This feature has no annotations

L3_105_000M1_scaffold_2054_12
Clostridium sp. CAG:288, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16842..17819)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AE2015 RepID=UPI0003B5C2B0
Putative nucleoside hydrolase {ECO:0000313|EMBL:CDE15965.1}; TaxID=1262791 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:288.;"
inosine/uridine-preferring nucleoside hydrolase
L3_105_000M1_scaffold_2054_13
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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18325..19263
DNA (939bp) protein (313aa)
Transcriptional regulator, AraC family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TW66_9CHLR
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFH84449.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
DNA-binding domain-containing protein
L3_105_000M1_scaffold_2054_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19288..20430
DNA (1143bp) protein (381aa)
Integrase core domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP11_9FIRM
Integrase core domain protein {ECO:0000313|EMBL:EDS00648.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Transposase and inactivated derivatives
L3_105_000M1_scaffold_2054_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20592..20861)
DNA (270bp) protein (90aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZR5_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK99514.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying 15 items

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