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L3_105_000M1_scaffold_2307

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2307_1
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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62..316
DNA (255bp) protein (85aa)
LexA repressor n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MAH2_9FIRM
LexA repressor {ECO:0000313|EMBL:CDB95545.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
XRE family transcriptional regulator
L3_105_000M1_scaffold_2307_2
unknown

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534..746
DNA (213bp) protein (71aa)

This feature has no annotations

L3_105_000M1_scaffold_2307_3
unknown

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824..1294
DNA (471bp) protein (157aa)

This feature has no annotations

L3_105_000M1_scaffold_2307_4
unknown

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1245..1475
DNA (231bp) protein (77aa)

This feature has no annotations

L3_105_000M1_scaffold_2307_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1575..2171
DNA (597bp) protein (199aa)
von Willebrand factor type A domain protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WVP5_9FIRM
von Willebrand factor type A domain protein {ECO:0000313|EMBL:CDD08116.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_105_000M1_scaffold_2307_6
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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2303..3124
DNA (822bp) protein (274aa)
Putative uncharacterized protein id=3474675 bin=GWF2_Clostridiales_38_85 species=Clostridium citroniae genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Kef-type K+ ransport system NAD-binding protein
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_2307_7
unknown

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3242..3355
DNA (114bp) protein (38aa)

This feature has no annotations

L3_105_000M1_scaffold_2307_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3371..4489
DNA (1119bp) protein (373aa)
Integrase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RJI6_9FIRM
Integrase {ECO:0000313|EMBL:CDC43221.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Integrase
L3_105_000M1_scaffold_2307_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4808..5641)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG29814.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
acetyl esterase
L3_105_000M1_scaffold_2307_10
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5668..6135)
DNA (468bp) protein (156aa)
single-stranded DNA-binding protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002F66491
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
SsrA-binding protein
L3_105_000M1_scaffold_2307_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6209..6808)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M3B8_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
recR; Recombination protein RecR
L3_105_000M1_scaffold_2307_12
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6812..7159)
DNA (348bp) protein (116aa)
Nucleoid-associated protein CLOSTMETH_02564 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFC2_9CLOT
Nucleoid-associated protein CLOSTMETH_02564 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_2307_13
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7205..8866)
DNA (1662bp) protein (554aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EEG29818.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEG29818.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
DNA polymerase III, subunit gamma and tau n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFC3_9CLOT
DNA polymerase III subunits gamma and tau
L3_105_000M1_scaffold_2307_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9271..10149
DNA (879bp) protein (293aa)
DegV family protein n=2 Tax=Clostridium botulinum B RepID=B2TL35_CLOBB
DegV family protein
DegV family protein {ECO:0000313|EMBL:ACD22036.1}; Uncharacterized protein {ECO:0000313|EMBL:CDH90639.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_105_000M1_scaffold_2307_15
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10219..10920)
DNA (702bp) protein (234aa)
Sporulation protein YunB n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFD9_9CLOT
Sporulation protein YunB {ECO:0000313|EMBL:EEG29834.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative secreted protein
L3_105_000M1_scaffold_2307_16
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11021..11731)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:273 RepID=R7L4C0_9CLOT
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_105_000M1_scaffold_2307_17
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11821..13476)
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CVX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76964.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_105_000M1_scaffold_2307_18
unknown

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comp(13525..13881)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY16_9FIRM
L3_105_000M1_scaffold_2307_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13977..14777)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47280.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Lysophospholipase L1 and related esterases
L3_105_000M1_scaffold_2307_20
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15133..17070
DNA (1938bp) protein (646aa)
Putative aconitate hydratase {ECO:0000313|EMBL:EEG29154.1}; EC=4.2.1.3 {ECO:0000313|EMBL:EEG29154.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
aconitase (EC:4.2.1.3)
Putative aconitate hydratase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EH67_9CLOT
L3_105_000M1_scaffold_2307_21
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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17106..17945
DNA (840bp) protein (280aa)
SPFH domain, Band 7 family protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AUZ6_SYNWW
hypothetical protein
SPFH domain, Band 7 family protein {ECO:0000313|EMBL:ABI69458.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
L3_105_000M1_scaffold_2307_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17992..19203
DNA (1212bp) protein (404aa)
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108, ECO:0000313|EMBL:CBL34574.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Isocitrate dehydrogenase [NADP] n=6 Tax=root RepID=D4JU90_9FIRM
L3_105_000M1_scaffold_2307_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19229..19882
DNA (654bp) protein (218aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFE8_9FIRM
rex; putative redox-sensing transcriptional regulator
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_2307_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20062..20829)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum BKT015925 RepID=F4AAJ3_CLOBO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB76330.1}; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
L3_105_000M1_scaffold_2307_25
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21668..21886)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=Q3BKH8_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ30048.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
Displaying 25 items

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