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L3_105_000M1_scaffold_1071

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1071_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(92..394)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO59768.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Hypothetical protein
L3_105_000M1_scaffold_1071_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(408..689)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MV71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC03653.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_105_000M1_scaffold_1071_3

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comp(772..1407)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1U1I8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC65386.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_105_000M1_scaffold_1071_4
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(2474..3136)
DNA (663bp) protein (221aa)
Nitroreductase family protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T7E2_9EURY
Nitroreductase family protein
Nitroreductase family protein {ECO:0000313|EMBL:AGN26569.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
L3_105_000M1_scaffold_1071_5
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3450..4493)
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSY2_CLOSD
Membrane protein {ECO:0000313|EMBL:EWM53976.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
conserved membrane protein of unknown function
L3_105_000M1_scaffold_1071_6
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4674..5519
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM53977.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L3_105_000M1_scaffold_1071_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5631..6503
DNA (873bp) protein (291aa)
ABC transporter ATP-binding protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W911_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24846.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_1071_8
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6503..7291
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WKW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07529.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_105_000M1_scaffold_1071_9
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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7398..7736
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N9H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79935.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_105_000M1_scaffold_1071_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7723..8364
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XGR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19509.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_105_000M1_scaffold_1071_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8505..9971)
DNA (1467bp) protein (489aa)
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Nicotinate phosphoribosyltransferase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MMB6_9FIRM
L3_105_000M1_scaffold_1071_12
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9968..10507)
DNA (540bp) protein (180aa)
Isochorismatase family protein {ECO:0000313|EMBL:EEG28843.1}; EC=3.-.-.- {ECO:0000313|EMBL:EEG28843.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Isochorismatase family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EI35_9CLOT
PncA; nicotinamidase-like amidase
L3_105_000M1_scaffold_1071_13
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10504..11994)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9H7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31887.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_1071_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12010..12492)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9H8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31888.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
membrane-flanked domain-containing protein
L3_105_000M1_scaffold_1071_15
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12750..13598
DNA (849bp) protein (283aa)
Phosphate binding protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DDI0_CLOS4
Phosphate binding protein {ECO:0000313|EMBL:ERJ00885.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_105_000M1_scaffold_1071_16
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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13735..14622
DNA (888bp) protein (296aa)
Phosphate ABC transporter, permease protein PstC n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPZ4_9FIRM
pstC; phosphate ABC transporter permease protein
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_1071_17
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14635..15570
DNA (936bp) protein (312aa)
Phosphate ABC transporter permease PstA n=1 Tax=Clostridium sp. CAG:43 RepID=R7B2I8_9CLOT
Phosphate ABC transporter permease PstA {ECO:0000313|EMBL:CDD56737.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
phosphate ABC transporter permease
L3_105_000M1_scaffold_1071_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15586..16341
DNA (756bp) protein (252aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Phosphate import ATP-binding protein pstB n=1 Tax=Clostridium sp. CAG:7 RepID=R5IM62_9CLOT
phosphate ABC transporter ATPase
L3_105_000M1_scaffold_1071_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16412..17074
DNA (663bp) protein (221aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQI1_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
phosphate uptake regulator PhoU
L3_105_000M1_scaffold_1071_20
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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17128..17823
DNA (696bp) protein (232aa)
Two-component system alkaline phosphatase synthesis response regulator PhoP n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X909_9CLOT
Two-component system alkaline phosphatase synthesis response regulator PhoP {ECO:0000313|EMBL:ENY92418.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
winged helix family two component transcriptional regulator
L3_105_000M1_scaffold_1071_21
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17902..19617
DNA (1716bp) protein (572aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
PAS domain S-box (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DWJ0_CLOS4
L3_105_000M1_scaffold_1071_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19688..21040)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MXC7_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EDO60949.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
MATE efflux family protein
L3_105_000M1_scaffold_1071_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21256..22155
DNA (900bp) protein (300aa)
S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000256|RuleBase:RU362030}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362030};; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
Methyltransferase, putative, TIGR00027 family n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K2Z0_CLOPA
methyltransferase, putative, TIGR00027 family
L3_105_000M1_scaffold_1071_24
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(22178..24160)
DNA (1983bp) protein (661aa)
Dihydropyrimidinase n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YBS8_TREAZ
dihydropyrimidinase
Dihydropyrimidinase {ECO:0000313|EMBL:AEF82282.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L3_105_000M1_scaffold_1071_25
unknown

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24233..24445
DNA (213bp) protein (71aa)

This feature has no annotations

L3_105_000M1_scaffold_1071_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24414..24953
DNA (540bp) protein (180aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG87_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDC66881.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Stage V sporulation protein AC
L3_105_000M1_scaffold_1071_27
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(25111..25857)
DNA (747bp) protein (249aa)
Transcriptional regulator, AraC family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TW66_9CHLR
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFH84449.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
DNA-binding domain-containing protein
L3_105_000M1_scaffold_1071_28
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(25880..26947)
DNA (1068bp) protein (356aa)
Putative integrase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MY37_9FIRM
Putative integrase {ECO:0000313|EMBL:CDB99051.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
integrase family protein
L3_105_000M1_scaffold_1071_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26987..28645)
DNA (1659bp) protein (553aa)
Exonuclease family protein n=1 Tax=Clostridium difficile F501 RepID=T4BYX3_CLODI
Exonuclease family protein {ECO:0000313|EMBL:EQI15237.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Exonuclease RNase T and DNA polymerase III
L3_105_000M1_scaffold_1071_30
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(28674..29090)
DNA (417bp) protein (139aa)
Uncharacterized protein id=3086705 bin=GWF2_Clostridiales_36_10 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
hypothetical protein predicted by Glimmer/Critica
Tax=GWF2_Clostridiales_36_10_curated
Displaying items 1-30 of 40 in total

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