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L3_105_000M1_scaffold_37

Search features with annotation key words

Displaying items 31-60 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_37_31
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

31402..32229
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036A0B08
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDC94461.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
hypothetical protein
L3_105_000M1_scaffold_37_32
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(32295..32924)
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=U5FA46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE47476.1}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
putative sporulation protein YtaF
L3_105_000M1_scaffold_37_33
Paenibacillus sp. FSL H7-0737, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33124..34770
DNA (1647bp) protein (549aa)
Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus lactis 154 RepID=G4HAT2_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ24225.1}; TaxID=1536775 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0737.;"
L3_105_000M1_scaffold_37_34
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34794..36626
DNA (1833bp) protein (611aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIC4_CLOPH
multi-sensor signal transduction histidine kinase
L3_105_000M1_scaffold_37_35
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36697..37701
DNA (1005bp) protein (335aa)
Sugar-binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B0I6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47379.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LacI family transcriptional regulator
L3_105_000M1_scaffold_37_36
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37868..39433
DNA (1566bp) protein (522aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Ribonuclease Y n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA64_9CLOT
conserved hypothetical protein
L3_105_000M1_scaffold_37_37
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(39490..40476)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AJG98223.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_105_000M1_scaffold_37_38
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40562..40921)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H518_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE34401.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_105_000M1_scaffold_37_39
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(40992..43091)
DNA (2100bp) protein (700aa)
sensor histidine kinase (EC:2.7.3.-)
Histidine kinase A domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N038_9CLOT
Signal transduction histidine kinase, core {ECO:0000313|EMBL:CFW97925.1}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
L3_105_000M1_scaffold_37_40
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43063..43764)
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDM8_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG30435.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
two-component system response regulator
L3_105_000M1_scaffold_37_41
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44028..45401)
DNA (1374bp) protein (458aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6W1_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU26928.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_105_000M1_scaffold_37_42
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45420..48332)
DNA (2913bp) protein (971aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46710.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
CoA-substrate-specific enzyme activase
L3_105_000M1_scaffold_37_43
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48752..48970)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF30_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG29932.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_37_44
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49014..49958)
DNA (945bp) protein (315aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF31_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEG29933.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
beta-lactamase
L3_105_000M1_scaffold_37_45
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49936..51825)
DNA (1890bp) protein (630aa)
UPF0313 protein CLOSTMETH_02471 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF32_9CLOT
UPF0313 protein CLOSTMETH_02471 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Fe-S oxidoreductase
L3_105_000M1_scaffold_37_46
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51918..54284)
DNA (2367bp) protein (789aa)
FtsK/SpoIIIE family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF33_9CLOT
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:EEG29935.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
cell division protein FtsK
L3_105_000M1_scaffold_37_47
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54396..55268)
DNA (873bp) protein (291aa)
Uncharacterized bacitracin resistance protein (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CBL18228.1};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
Undecaprenyl-diphosphatase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LF33_RUMC1
L3_105_000M1_scaffold_37_48
unknown

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comp(55324..55527)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_105_000M1_scaffold_37_49
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55535..56317)
DNA (783bp) protein (261aa)
Endopeptidase Clp {ECO:0000313|EMBL:EEG29938.1}; EC=3.4.21.92 {ECO:0000313|EMBL:EEG29938.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Endopeptidase Clp n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF35_9CLOT
peptidase S14 ClpP
L3_105_000M1_scaffold_37_50
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56564..57526
DNA (963bp) protein (321aa)
birA; BirA bifunctional protein (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7A3_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_105_000M1_scaffold_37_51
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57669..58508)
DNA (840bp) protein (280aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EEG31446.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EEG31446.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC:2.4.2.19)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAX8_9CLOT
L3_105_000M1_scaffold_37_52
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58561..60030)
DNA (1470bp) protein (490aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Putative L-aspartate oxidase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2Q3_9FIRM
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
L3_105_000M1_scaffold_37_53
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60391..60801
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EPG3_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI96662.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
L3_105_000M1_scaffold_37_54
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60980..62533
DNA (1554bp) protein (518aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EG78_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG29535.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC transporter-like protein
L3_105_000M1_scaffold_37_55
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(62775..63521)
DNA (747bp) protein (249aa)
Arginine ABC transporter, ATP-binding protein ArtM n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1X5D1_ANEAE
Arginine ABC transporter, ATP-binding protein ArtM {ECO:0000313|EMBL:ERI09738.1}; TaxID=649747 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
glnQ2; glutamine ABC transport system ATP-binding protein GlnQ2
L3_105_000M1_scaffold_37_56
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63609..64262)
DNA (654bp) protein (218aa)
amino acid ABC transporter permease n=1 Tax=Bacillus sp. AP8 RepID=UPI0002DC075E
ABC transporter, permease protein {ECO:0000313|EMBL:EEG28623.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
amino acid ABC transporter permease
L3_105_000M1_scaffold_37_57
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64298..65011)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P3W2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC13171.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter-like protein
L3_105_000M1_scaffold_37_58
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64956..65741)
DNA (786bp) protein (262aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I7B0_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCY32646.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
binding-protein-dependent transport system inner membrane protein
L3_105_000M1_scaffold_37_59
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65713..66711)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DMV8_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI98140.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_105_000M1_scaffold_37_60
Firmicutes bacterium CAG:449, Firmicutes, Bacteria

Not on your lists

67094..67342
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:449 RepID=R6S7Q9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42712.1}; TaxID=1263023 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:449.;"
hypothetical protein
Displaying items 31-60 of 153 in total

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