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L3_105_000M1_scaffold_178

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_178_1
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

644..922
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BS10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA63764.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
L3_105_000M1_scaffold_178_2
unknown

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941..1066
DNA (126bp) protein (42aa)

This feature has no annotations

L3_105_000M1_scaffold_178_3
unknown

Not on your lists

comp(1530..1964)
DNA (435bp) protein (145aa)

This feature has no annotations

L3_105_000M1_scaffold_178_4
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2030..3865
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9NCS6_9FIRM
Putative site-specific recombinase/resolvase, N-terminal domain protein {ECO:0000313|EMBL:KFI47084.1}; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_105_000M1_scaffold_178_5
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3945..4139
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) RepID=C5WHH4_STRDG
Uncharacterized protein {ECO:0000313|EMBL:KFI71411.1}; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
hypothetical protein
L3_105_000M1_scaffold_178_6
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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4206..4568
DNA (363bp) protein (121aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T926_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KFI47082.1}; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
hypothetical protein
L3_105_000M1_scaffold_178_7
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4701..6152
DNA (1452bp) protein (484aa)
MobA/MobL family protein {ECO:0000313|EMBL:KFI47081.1}; EC=5.99.1.2 {ECO:0000313|EMBL:KFI47081.1};; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
Uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=R9MWP5_9FIRM
hypothetical protein
L3_105_000M1_scaffold_178_8
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6349..7755)
DNA (1407bp) protein (469aa)
Glycosyltransferase, MGT family {ECO:0000313|EMBL:KFI47080.1}; EC=2.4.1.298 {ECO:0000313|EMBL:KFI47080.1};; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
Glycosyltransferase, MGT family n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LJQ7_9FIRM
UDP-glucoronosyl and UDP-glucosyl transferase
L3_105_000M1_scaffold_178_9
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7752..7970)
DNA (219bp) protein (73aa)
AbrB family transcriptional regulator n=1 Tax=Streptococcus mutans RepID=UPI0002DF9D6C
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:KFI47079.1}; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
hypothetical protein
L3_105_000M1_scaffold_178_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8030..8440)
DNA (411bp) protein (137aa)
Sigma-70, region 4 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D098_9CLOT
DNA-directed RNA polymerase specialized sigma subunit
Sigma-70, region 4 {ECO:0000313|EMBL:ERI72971.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_105_000M1_scaffold_178_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8892..11447)
DNA (2556bp) protein (852aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IRV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42994.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_105_000M1_scaffold_178_12
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11440..12000)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V081_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ83660.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
hypothetical protein
L3_105_000M1_scaffold_178_13
unknown

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comp(12012..12248)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_105_000M1_scaffold_178_14
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12196..12450)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D824_DESAJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM41948.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
L3_105_000M1_scaffold_178_15
Enterococcus sp. HSIEG1, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12450..12608)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Enterococcus sp. HSIEG1 RepID=T0VEZ5_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EQC79994.1}; TaxID=1316414 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus sp. HSIEG1.;"
L3_105_000M1_scaffold_178_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12757..13440
DNA (684bp) protein (228aa)
Immunity repressor protein n=1 Tax=Clostridium intestinale URNW RepID=U2NTT6_9CLOT
hypothetical phage protein
Hypothetical phage protein {ECO:0000313|EMBL:CCO06244.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_105_000M1_scaffold_178_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13445..14827
DNA (1383bp) protein (461aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDT0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG30278.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
site-specific recombinase XerD
L3_105_000M1_scaffold_178_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

15598..16236
DNA (639bp) protein (213aa)
Putative proton-coupled thiamine transporter YuaJ n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZKT8_9FIRM
Putative proton-coupled thiamine transporter YuaJ {ECO:0000313|EMBL:CDD31052.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Predicted membrane protein
L3_105_000M1_scaffold_178_19
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16379..17086
DNA (708bp) protein (236aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ytzG; putative RNA pseudouridine synthase YtzG (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT
L3_105_000M1_scaffold_178_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17265..18407
DNA (1143bp) protein (381aa)
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L183_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDE82395.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_105_000M1_scaffold_178_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18600..18866)
DNA (267bp) protein (89aa)
Predicted transcriptional regulator n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L909_9FIRM
Predicted transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBL16104.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_105_000M1_scaffold_178_22
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19298..19837
DNA (540bp) protein (180aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYQ4_9FIRM
Putative lipoprotein {ECO:0000313|EMBL:CDA20348.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
lipoprotein
L3_105_000M1_scaffold_178_23
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19966..20688)
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VWF4_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD03003.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
polar amino acid ABC transporter ATPase
L3_105_000M1_scaffold_178_24
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20675..21421)
DNA (747bp) protein (249aa)
ABC transporter, permease protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9Q5_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEG31820.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
L3_105_000M1_scaffold_178_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21496..22323)
DNA (828bp) protein (276aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9Q4_9CLOT
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEG31819.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
family 3 extracellular solute-binding protein
L3_105_000M1_scaffold_178_26
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22536..23423)
DNA (888bp) protein (296aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36F41
L3_105_000M1_scaffold_178_27
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23480..24550)
DNA (1071bp) protein (357aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UDE1_RUMA7
L3_105_000M1_scaffold_178_28
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24824..25507)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Paenibacillus mucilaginosus RepID=H6NLE5_9BACL
Putative SanA protein {ECO:0000313|EMBL:CEO90396.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
hypothetical protein
L3_105_000M1_scaffold_178_29
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25642..26355)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBJ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31117.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
NERD domain-containing protein
L3_105_000M1_scaffold_178_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26744..26953
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41218.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
putative membrane protein
Displaying items 1-30 of 95 in total

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