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L3_105_000M1_scaffold_504

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_504_1
unknown

Not on your lists

comp(2..1390)
DNA (1389bp) protein (463aa)

This feature has no annotations

L3_105_000M1_scaffold_504_2
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1604..3133)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GFJ5_9BACL
Parallel beta-helix repeat {ECO:0000313|EMBL:GAF07670.1}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
hypothetical protein
L3_105_000M1_scaffold_504_3
Paenibacillus sp. IHB B 3415, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3301..5625)
DNA (2325bp) protein (775aa)
Response regulator n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VQV5_CLOSH
AraC family transcriptional regulator {ECO:0000313|EMBL:KHL92773.1}; TaxID=867080 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. IHB B 3415.;"
AraC family transcriptional regulator
L3_105_000M1_scaffold_504_4
Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5644..6627)
DNA (984bp) protein (328aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4Q989_CALH1
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADQ08138.1}; TaxID=632292 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 /; 108).;"
L3_105_000M1_scaffold_504_5
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6644..7591)
DNA (948bp) protein (316aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYT2_MAHA5
CUT1 family carbohydrate ABC transporter membrane protein 1
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEE95677.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_504_6
Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7601..9826)
DNA (2226bp) protein (742aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4Q991_CALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ08140.1}; Flags: Precursor;; TaxID=632292 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 /; 108).;"
L3_105_000M1_scaffold_504_7
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9934..10563)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GD08_9BACL
Uncharacterized protein {ECO:0000313|EMBL:GAE07686.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
nhl repeat containing protein
L3_105_000M1_scaffold_504_8
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10560..12044)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XM58_CALS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP67993.1}; Flags: Precursor;; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
L3_105_000M1_scaffold_504_9
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12193..13050)
DNA (858bp) protein (286aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Caldicellulosiruptor RepID=B9MM96_CALBD
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACM59328.1}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
L3_105_000M1_scaffold_504_10
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13090..14001)
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GCZ2_9BACL
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:GAE07682.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
ABC transporter permease
L3_105_000M1_scaffold_504_11
Bacillus sp. TS-2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14029..16899)
DNA (2871bp) protein (957aa)
Extracellular solute-binding protein family 1 n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PRE0_9BACT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAF63853.1}; TaxID=1450694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. TS-2.;"
family 1 extracellular solute-binding protein
L3_105_000M1_scaffold_504_12
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17323..20070)
DNA (2748bp) protein (916aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SKY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC60590.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
glycerophosphoryl diester phosphodiesterase
L3_105_000M1_scaffold_504_13
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(20300..21589)
DNA (1290bp) protein (430aa)
FAD dependent oxidoreductase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LVA6_9FIRM
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDB87584.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_105_000M1_scaffold_504_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21752..23407)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Prevotella maculosa RepID=UPI000377610F
Uncharacterized protein {ECO:0000313|EMBL:GAO43093.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
L3_105_000M1_scaffold_504_15
unknown

Not on your lists

comp(23479..24573)
DNA (1095bp) protein (365aa)

This feature has no annotations

L3_105_000M1_scaffold_504_16
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24606..26051)
DNA (1446bp) protein (482aa)
Lipolytic protein G-D-S-L family id=4748878 bin=GWA2_Bacteroidetes_42_15 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
hydrolase GDSL
Tax=GWE2_Bacteroidetes_42_39_curated
L3_105_000M1_scaffold_504_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26087..28213)
DNA (2127bp) protein (709aa)
hypothetical protein n=1 Tax=Prevotella oris RepID=UPI00035C864D
Uncharacterized protein {ECO:0000313|EMBL:GAO43093.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
L3_105_000M1_scaffold_504_18
unknown

Not on your lists

comp(28294..29985)
DNA (1692bp) protein (564aa)

This feature has no annotations

L3_105_000M1_scaffold_504_19
Caldatribacterium californiense, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(30135..32795)
DNA (2661bp) protein (887aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000378C557
alpha-L-rhamnosidase
Tax=Caldatribacterium californiense
L3_105_000M1_scaffold_504_20
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32833..33405)
DNA (573bp) protein (191aa)
Ribose 5-phosphate isomerase RpiB (EC:5.3.1.6)
Ribose 5-phosphate isomerase RpiB n=1 Tax=Clostridium sp. CAG:448 RepID=R6SMI0_9CLOT
Ribose 5-phosphate isomerase RpiB {ECO:0000313|EMBL:CDC61125.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_105_000M1_scaffold_504_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33494..34876)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YQK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36150.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sugar ABC transporter substrate-binding protein
L3_105_000M1_scaffold_504_22
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34915..35868)
DNA (954bp) protein (318aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYT3_MAHA5
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEE95678.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_504_23
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35887..36783)
DNA (897bp) protein (299aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYT2_MAHA5
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEE95677.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_504_24
Paenibacillus sp. FSL R5-0912, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(36783..39320)
DNA (2538bp) protein (846aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037AC7BD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ40854.1}; TaxID=1536771 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-0912.;"
L3_105_000M1_scaffold_504_25
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39336..39965)
DNA (630bp) protein (210aa)
NHL repeat containing protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYS7_MAHA5
NHL repeat containing protein
NHL repeat containing protein {ECO:0000313|EMBL:AEE95672.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_504_26
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40127..41578)
DNA (1452bp) protein (484aa)
TPR repeat-containing protein n=2 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=M4YMB1_CLOSH
TPR repeat-containing protein
Gluconolactonase {ECO:0000313|EMBL:AGC68124.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_105_000M1_scaffold_504_27
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(41620..42522)
DNA (903bp) protein (301aa)
ABC-type sugar transport system, permease component n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EFD1_THECK
sugar ABC transporter permease
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:AGA58386.1}; Flags: Precursor;; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
L3_105_000M1_scaffold_504_28
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42524..43483)
DNA (960bp) protein (320aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W1K1_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDD03290.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ABC transporter permease
L3_105_000M1_scaffold_504_29
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43490..46396)
DNA (2907bp) protein (969aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYS4_MAHA5
CUT1 family carbohydrate ABC transporter substrate-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:AEE95669.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_504_30
Caldatribacterium californiense, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(46425..49118)
DNA (2694bp) protein (898aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000378C557
alpha-L-rhamnosidase
Tax=Caldatribacterium californiense
Displaying items 1-30 of 34 in total

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