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L3_105_000M1_scaffold_872

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_872_1
unknown

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comp(1..405)
DNA (405bp) protein (135aa)

This feature has no annotations

L3_105_000M1_scaffold_872_2
GWC2_Spirochaetes_52_13_curated, Spirochaetes, Bacteria

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1091..2230
DNA (1140bp) protein (380aa)
Transcriptional regulator id=3453295 bin=GWC2_Spirochaete_52_13 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
LacI family transcriptional regulator
Tax=GWC2_Spirochaetes_52_13_curated
L3_105_000M1_scaffold_872_3
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2300..2458)
DNA (159bp) protein (53aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MIF4_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFV01050.1}; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
amino acid ABC transporter substrate-binding protein
L3_105_000M1_scaffold_872_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2403..3020)
DNA (618bp) protein (206aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0002E9699F
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEG30178.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative glutamine-binding periplasmic protein
L3_105_000M1_scaffold_872_5
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3269..5365)
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AJQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD53641.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
hypothetical protein
L3_105_000M1_scaffold_872_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(5340..6239)
DNA (900bp) protein (300aa)
ABC transporter, ATP-binding protein id=2188940 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ABC transporter
Tax=GWF2_Firmicutes_51_9_curated
L3_105_000M1_scaffold_872_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6287..6682)
DNA (396bp) protein (132aa)
Transcriptional regulator n=1 Tax=Clostridium sp. MSTE9 RepID=J0WPZ4_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:EJF38521.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
transcriptional regulator, GntR family
L3_105_000M1_scaffold_872_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7273..9036
DNA (1764bp) protein (588aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
pyk; Pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8W2_9CLOT
L3_105_000M1_scaffold_872_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9505..10809
DNA (1305bp) protein (435aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
phenylacetate-CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN66_9FIRM
L3_105_000M1_scaffold_872_10
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10884..12608
DNA (1725bp) protein (575aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
iorA; Indolepyruvate ferredoxin oxidoreductase, alpha subunit (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Clostridium sp. CAG:75 RepID=R5SQ14_9CLOT
L3_105_000M1_scaffold_872_11
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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12634..13275
DNA (642bp) protein (214aa)
Lipolytic enzyme, G-D-S-L family n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XHL3_CALS8
G-D-S-L lipolytic protein family
Lipolytic enzyme, G-D-S-L family {ECO:0000313|EMBL:ABP66398.2}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
L3_105_000M1_scaffold_872_12
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13303..13881
DNA (579bp) protein (193aa)
Indolepyruvate oxidoreductase {ECO:0000313|EMBL:EWM54661.1}; EC=1.2.7.8 {ECO:0000313|EMBL:EWM54661.1};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit (EC:1.2.7.8)
indolepyruvate oxidoreductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI000304B519
L3_105_000M1_scaffold_872_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13898..15205
DNA (1308bp) protein (436aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-CoA ligase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLD3_9FIRM
L3_105_000M1_scaffold_872_14
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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15230..15661
DNA (432bp) protein (144aa)
Amino acid-binding ACT domain protein n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XL50_CALS8
amino acid-binding ACT domain-containing protein
Amino acid-binding ACT domain protein {ECO:0000313|EMBL:ABP67635.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
L3_105_000M1_scaffold_872_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15716..16576
DNA (861bp) protein (287aa)
Prephenate dehydrogenase n=1 Tax=Ruminococcus albus 8 RepID=E9SB55_RUMAL
Prephenate dehydrogenase {ECO:0000313|EMBL:EXM39728.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
prephenate dehydrogenase
L3_105_000M1_scaffold_872_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16864..19647
DNA (2784bp) protein (928aa)
Putative potassium/sodium efflux P-type ATPase, fungal-type n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBQ1_9CLOT
Putative potassium/sodium efflux P-type ATPase, fungal-type {ECO:0000313|EMBL:EEG31105.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
sarco/endoplasmic reticulum calcium-translocating P-type ATPase
L3_105_000M1_scaffold_872_17
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19744..20259)
DNA (516bp) protein (172aa)
HD domain protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V1P0_9FIRM
HD domain protein {ECO:0000313|EMBL:CCZ84195.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
uncharacterized domain HDIG
L3_105_000M1_scaffold_872_18
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20569..21387)
DNA (819bp) protein (273aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W8P3_DESOD
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AET67470.1}; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
L3_105_000M1_scaffold_872_19
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21451..23070)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VMI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KEZ85055.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
ABC transporter permease
L3_105_000M1_scaffold_872_20
unknown

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comp(23434..23907)
DNA (474bp) protein (158aa)

This feature has no annotations

L3_105_000M1_scaffold_872_21
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24154..27105)
DNA (2952bp) protein (984aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZT8_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE81286.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
N-acetylmuramoyl-L-alanine amidase
L3_105_000M1_scaffold_872_22
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27150..28568)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EPL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04854.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_105_000M1_scaffold_872_23
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28849..29400
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECS0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG30714.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_872_24
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29397..30266)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BKM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KIE44909.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
hypothetical protein
L3_105_000M1_scaffold_872_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30288..32015)
DNA (1728bp) protein (576aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEF2_9CLOT
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEG30140.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC-type oligopeptide transport system, periplasmic component
L3_105_000M1_scaffold_872_26
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32070..32567)
DNA (498bp) protein (166aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEE9_9CLOT
L3_105_000M1_scaffold_872_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32683..35004)
DNA (2322bp) protein (774aa)
Ribonucleoside-triphosphate reductase class III catalytic subunit {ECO:0000313|EMBL:CBL34788.1}; EC=1.17.4.2 {ECO:0000313|EMBL:CBL34788.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
ribonucleoside-triphosphate reductase class III catalytic subunit (EC:1.17.4.2)
Ribonucleoside-triphosphate reductase class III catalytic subunit n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MM05_9FIRM
L3_105_000M1_scaffold_872_28
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35331..36107)
DNA (777bp) protein (259aa)
Peptidase M56 family protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KX46_OSCVS
peptidase M56 family protein
Peptidase M56 family protein {ECO:0000313|EMBL:BAK98461.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_105_000M1_scaffold_872_29
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(36894..39227)
DNA (2334bp) protein (778aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UCF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC77801.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
beta-galactosidase/beta-glucuronidase
L3_105_000M1_scaffold_872_30
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(39377..40582)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TV90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC76080.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Displaying items 1-30 of 31 in total

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