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L3_105_000M1_scaffold_1308

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1308_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..445)
DNA (444bp) protein (148aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H649_9FIRM
Signal transduction histidine kinase
L3_105_000M1_scaffold_1308_2
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(442..1119)
DNA (678bp) protein (226aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GTJ8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL41140.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_105_000M1_scaffold_1308_3
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1145..1414
DNA (270bp) protein (90aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=F7KLS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN46317.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_105_000M1_scaffold_1308_4
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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1407..2327
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72450.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1308_5
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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2324..3259
DNA (936bp) protein (312aa)
Redoxin family protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0Z8_9FIRM
Redoxin family protein {ECO:0000313|EMBL:CCX72449.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
AhpC/TSA family.
L3_105_000M1_scaffold_1308_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(3842..5635)
DNA (1794bp) protein (598aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX35_9FIRM
L3_105_000M1_scaffold_1308_7
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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6064..7368
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72447.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1308_8
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7389..8075
DNA (687bp) protein (229aa)
OmpR family two-component response regulator n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWJ3_OSCVS
OmpR family two-component response regulator
OmpR family two-component response regulator {ECO:0000313|EMBL:BAL00814.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_105_000M1_scaffold_1308_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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8104..9531
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
putative two-component histidine kinase (EC:2.7.13.3)
Putative two-component histidine kinase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0Z3_9FIRM
L3_105_000M1_scaffold_1308_10
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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9599..10546
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72443.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1308_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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10602..11480
DNA (879bp) protein (293aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hemK; protein methyltransferase HemK (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6G2_9FIRM
L3_105_000M1_scaffold_1308_12
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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11562..12668
DNA (1107bp) protein (369aa)
Protein RecA n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D9B6_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
recA; RecA protein
L3_105_000M1_scaffold_1308_13
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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12634..13278
DNA (645bp) protein (215aa)
Regulatory protein RecX n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX28_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
recX; regulatory protein RecX
L3_105_000M1_scaffold_1308_14
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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13470..14807
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0Y6_9FIRM
hypothetical protein
L3_105_000M1_scaffold_1308_15
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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14812..15342
DNA (531bp) protein (177aa)
pgsA; phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX22_9FIRM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CCX72438.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_16
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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15353..15667
DNA (315bp) protein (105aa)
CbrA protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6F7_9FIRM
CbrA protein {ECO:0000313|EMBL:CCX72437.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
oxidoreductase
L3_105_000M1_scaffold_1308_17
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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15991..17439
DNA (1449bp) protein (483aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D9B1_9FIRM
L3_105_000M1_scaffold_1308_18
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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18329..18889
DNA (561bp) protein (187aa)
DNA-binding protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX23_9FIRM
DNA-binding protein {ECO:0000313|EMBL:CCX72435.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
transcriptional regulator
L3_105_000M1_scaffold_1308_19
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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19017..19232
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72434.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_20
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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19602..20399
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72432.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_21
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(20716..22074)
DNA (1359bp) protein (453aa)
Transcriptional regulator/sugar kinase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D9A6_9FIRM
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:CCX72431.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Transcriptional regulator/sugar kinase
L3_105_000M1_scaffold_1308_22
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(22099..22536)
DNA (438bp) protein (146aa)
GtrA family protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CX16_9FIRM
GtrA family protein {ECO:0000313|EMBL:CCX72430.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1308_23
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(22562..23662)
DNA (1101bp) protein (367aa)
tryptophanyl-tRNA synthetase II (EC:6.1.1.2)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0X4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72429.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_24
unknown

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23811..24227
DNA (417bp) protein (139aa)

This feature has no annotations

L3_105_000M1_scaffold_1308_25
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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25205..26422
DNA (1218bp) protein (406aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DAD2_9FIRM
L3_105_000M1_scaffold_1308_26
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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26604..26909
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CY23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72815.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_27
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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26921..27205
DNA (285bp) protein (95aa)
Putative holin n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D220_9FIRM
Putative holin {ECO:0000313|EMBL:CCX72814.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_105_000M1_scaffold_1308_28
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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27198..27779
DNA (582bp) protein (194aa)
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CY36_9FIRM
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCX72813.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
cell wall hydrolase/autolysin
L3_105_000M1_scaffold_1308_29
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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27773..27982
DNA (210bp) protein (70aa)
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CY36_9FIRM
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCX72813.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_1308_30
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(28094..28204)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7J1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72812.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Displaying items 1-30 of 38 in total

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