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L3_105_000M1_scaffold_4587

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_4587_1
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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3..926
DNA (924bp) protein (308aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GWY6_9FIRM
L3_105_000M1_scaffold_4587_2
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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916..1629
DNA (714bp) protein (238aa)
KDP operon transcriptional regulatory protein KdpE n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H1E2_9FIRM
KDP operon transcriptional regulatory protein KdpE {ECO:0000313|EMBL:CCY21894.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_105_000M1_scaffold_4587_3
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(2381..2629)
DNA (249bp) protein (83aa)
Ig-like domain-containing protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D3D4_9FIRM
Ig-like domain-containing protein {ECO:0000313|EMBL:CCX74678.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_105_000M1_scaffold_4587_4
unknown

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comp(2682..2963)
DNA (282bp) protein (94aa)

This feature has no annotations

L3_105_000M1_scaffold_4587_5
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(2960..3745)
DNA (786bp) protein (262aa)
ABC transporter related protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D774_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CCX74679.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
ABC transporter-like protein
L3_105_000M1_scaffold_4587_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(3735..4751)
DNA (1017bp) protein (339aa)
Transport system permease protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D368_9FIRM
Transport system permease protein {ECO:0000313|EMBL:CCX74680.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
transport system permease
L3_105_000M1_scaffold_4587_7
unknown

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comp(4767..5087)
DNA (321bp) protein (107aa)

This feature has no annotations

L3_105_000M1_scaffold_4587_8
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(5397..6488)
DNA (1092bp) protein (364aa)
Periplasmic binding protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DFK1_9FIRM
Periplasmic binding protein {ECO:0000313|EMBL:CCX74681.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
periplasmic binding protein
L3_105_000M1_scaffold_4587_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(6651..7421)
DNA (771bp) protein (257aa)
Transcriptional regulator IclR family n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DCU3_9FIRM
Transcriptional regulator IclR family {ECO:0000313|EMBL:CCX74682.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
IclR family transcriptional regulator
L3_105_000M1_scaffold_4587_10
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(7418..8044)
DNA (627bp) protein (209aa)
Metallophosphoesterase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D3E0_9FIRM
Metallophosphoesterase {ECO:0000313|EMBL:CCX74683.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
metallophosphoesterase
L3_105_000M1_scaffold_4587_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(8290..9072)
DNA (783bp) protein (261aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D779_9FIRM
L3_105_000M1_scaffold_4587_12
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(9044..11926)
DNA (2883bp) protein (961aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D779_9FIRM
L3_105_000M1_scaffold_4587_13
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(11948..15625)
DNA (3678bp) protein (1226aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D372_9FIRM
Displaying 13 items

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